Variant report

Variant	rs58004852
Chromosome Location	chr4:100601801-100601802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs72901505	1.00[AFR][1000 genomes]
rs72901515	1.00[AFR][1000 genomes]
rs72901556	1.00[AFR][1000 genomes]
rs72908793	1.00[AFR][1000 genomes]
rs72908799	1.00[AFR][1000 genomes]
rs72910604	0.88[AFR][1000 genomes]
rs72910610	0.93[AFR][1000 genomes]
rs72910622	1.00[AFR][1000 genomes]
rs72917463	1.00[AFR][1000 genomes]
rs72917485	1.00[AFR][1000 genomes]
rs72917501	1.00[AFR][1000 genomes]
rs72919303	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100600800-100605000	Weak transcription	Fetal Lung	lung
2	chr4:100601600-100602600	Enhancers	Fetal Heart	heart
3	chr4:100601600-100603000	Weak transcription	Psoas Muscle	Psoas
4	chr4:100601600-100608200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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