Variant report

Variant	rs139087796
Chromosome Location	chr6:149889913-149889914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149888124..149890319-chr6:149910443..149912439,2	MCF-7	breast:
2	chr6:149887426..149891060-chr6:150037726..150040656,4	K562	blood:
3	chr6:149886600..149889254-chr6:149889358..149891247,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131023	Chromatin interaction
ENSG00000055211	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966665	chr6:149862756-149895103	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv7976	chr6:149888973-149891110	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv7977	chr6:149888973-149891110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149888400-149893800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:149888400-149893800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:149888400-149894200	Weak transcription	Ovary	ovary
4	chr6:149888400-149897400	Weak transcription	Lung	lung
5	chr6:149888400-149901600	Weak transcription	Aorta	Aorta
6	chr6:149888400-149902000	Weak transcription	Gastric	stomach
7	chr6:149888400-149911600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:149888600-149893800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:149888600-149893800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:149888600-149894000	Weak transcription	Fetal Intestine Large	intestine
11	chr6:149888600-149894200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:149888600-149894400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:149888600-149894600	Weak transcription	Left Ventricle	heart
14	chr6:149888600-149895600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:149888600-149897200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:149888600-149897400	Weak transcription	Right Ventricle	heart
17	chr6:149888600-149898000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:149888600-149898400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:149888600-149901400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:149888600-149901400	Weak transcription	Colonic Mucosa	Colon
21	chr6:149888600-149901600	Weak transcription	NH-A	brain
22	chr6:149888600-149905200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:149888600-149907600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:149888600-149909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:149888600-149912800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:149888600-149922000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:149888800-149890200	Enhancers	Primary B cells from peripheral blood	blood
28	chr6:149888800-149891000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:149888800-149891400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:149888800-149891800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr6:149888800-149893800	Weak transcription	Fetal Intestine Small	intestine
32	chr6:149888800-149894000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:149888800-149894400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:149888800-149894600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:149888800-149896000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:149888800-149896800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr6:149888800-149897200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:149888800-149898000	Weak transcription	Fetal Kidney	kidney
39	chr6:149888800-149898200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:149888800-149898200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:149888800-149898200	Weak transcription	Esophagus	oesophagus
42	chr6:149888800-149901400	Weak transcription	Fetal Brain Female	brain
43	chr6:149888800-149901600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:149888800-149901600	Weak transcription	NHLF	lung
45	chr6:149888800-149901800	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr6:149888800-149904800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr6:149888800-149914800	Weak transcription	A549	lung
48	chr6:149889000-149890000	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr6:149889000-149893800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr6:149889000-149893800	Weak transcription	Adipose Nuclei	Adipose

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