Variant report

Variant	rs1390924
Chromosome Location	chr4:44965514-44965515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 173 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs10000575	0.93[ASN][1000 genomes]
rs10007607	0.97[ASN][1000 genomes]
rs10012246	0.93[ASN][1000 genomes]
rs10012356	0.93[ASN][1000 genomes]
rs10013812	0.95[ASN][1000 genomes]
rs10013935	0.96[ASN][1000 genomes]
rs10015650	0.97[ASN][1000 genomes]
rs10015652	0.97[ASN][1000 genomes]
rs10016495	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10017095	0.92[ASN][1000 genomes]
rs10017985	0.93[ASN][1000 genomes]
rs10020374	0.96[ASN][1000 genomes]
rs10025522	0.96[ASN][1000 genomes]
rs10028195	0.96[ASN][1000 genomes]
rs10030848	0.96[ASN][1000 genomes]
rs10033860	0.92[ASN][1000 genomes]
rs10033979	0.93[ASN][1000 genomes]
rs1111981	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11933837	1.00[ASN][1000 genomes]
rs11935846	0.87[ASN][1000 genomes]
rs11935972	1.00[ASN][1000 genomes]
rs11938675	0.97[ASN][1000 genomes]
rs11944280	0.97[ASN][1000 genomes]
rs11946177	0.97[ASN][1000 genomes]
rs12505745	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12509720	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12640112	0.96[ASN][1000 genomes]
rs12641418	0.96[ASN][1000 genomes]
rs12642863	0.97[ASN][1000 genomes]
rs12643056	0.96[ASN][1000 genomes]
rs12643086	0.95[ASN][1000 genomes]
rs12646818	0.96[ASN][1000 genomes]
rs12647628	0.96[ASN][1000 genomes]
rs12649134	0.97[ASN][1000 genomes]
rs12649138	0.97[ASN][1000 genomes]
rs13105769	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13133064	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1390911	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1390927	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1496981	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1496994	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1497005	0.91[ASN][1000 genomes]
rs1497006	0.91[ASN][1000 genomes]
rs1497007	0.89[ASN][1000 genomes]
rs1497013	0.95[ASN][1000 genomes]
rs1587239	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17608329	0.93[ASN][1000 genomes]
rs17608378	0.96[ASN][1000 genomes]
rs17608406	0.96[ASN][1000 genomes]
rs17654704	0.92[ASN][1000 genomes]
rs1908807	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2002381	1.00[ASN][1000 genomes]
rs2101913	0.93[ASN][1000 genomes]
rs2173109	0.96[ASN][1000 genomes]
rs2348808	0.97[ASN][1000 genomes]
rs2348809	0.97[ASN][1000 genomes]
rs28396281	1.00[ASN][1000 genomes]
rs28404990	0.97[ASN][1000 genomes]
rs28407439	0.93[ASN][1000 genomes]
rs28415060	1.00[ASN][1000 genomes]
rs28419289	1.00[ASN][1000 genomes]
rs28421558	0.88[ASN][1000 genomes]
rs28430557	0.96[ASN][1000 genomes]
rs28433591	1.00[ASN][1000 genomes]
rs28471010	0.96[ASN][1000 genomes]
rs28474886	0.96[ASN][1000 genomes]
rs28476627	0.91[ASN][1000 genomes]
rs28481662	0.95[ASN][1000 genomes]
rs28494119	0.93[ASN][1000 genomes]
rs28542523	0.96[ASN][1000 genomes]
rs28544196	0.91[ASN][1000 genomes]
rs28544522	0.93[ASN][1000 genomes]
rs28555525	0.95[ASN][1000 genomes]
rs28588810	0.95[ASN][1000 genomes]
rs28595122	0.96[ASN][1000 genomes]
rs28609450	0.97[ASN][1000 genomes]
rs28618344	0.91[ASN][1000 genomes]
rs28638095	0.91[ASN][1000 genomes]
rs28651070	1.00[ASN][1000 genomes]
rs28653265	0.97[ASN][1000 genomes]
rs28661605	0.88[ASN][1000 genomes]
rs28661881	0.96[ASN][1000 genomes]
rs28665855	0.96[ASN][1000 genomes]
rs28670264	0.95[ASN][1000 genomes]
rs28671037	0.93[ASN][1000 genomes]
rs28690995	0.96[ASN][1000 genomes]
rs28702818	0.96[ASN][1000 genomes]
rs28710415	0.96[ASN][1000 genomes]
rs28767196	0.97[ASN][1000 genomes]
rs28770470	0.97[ASN][1000 genomes]
rs28790942	0.97[ASN][1000 genomes]
rs28809793	0.97[ASN][1000 genomes]
rs28814269	0.97[ASN][1000 genomes]
rs2882025	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28823394	0.97[ASN][1000 genomes]
rs28827511	0.97[ASN][1000 genomes]
rs28846973	0.97[ASN][1000 genomes]
rs28862974	0.97[ASN][1000 genomes]
rs28868678	0.98[ASN][1000 genomes]
rs28873529	0.97[ASN][1000 genomes]
rs28896188	1.00[ASN][1000 genomes]
rs4074007	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4308399	0.97[ASN][1000 genomes]
rs4613605	0.97[ASN][1000 genomes]
rs4694791	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4695065	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4695066	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55700340	0.97[ASN][1000 genomes]
rs55711177	0.97[ASN][1000 genomes]
rs56196939	0.97[ASN][1000 genomes]
rs56318819	0.97[ASN][1000 genomes]
rs56373602	0.97[ASN][1000 genomes]
rs58034832	0.91[ASN][1000 genomes]
rs58140665	0.95[ASN][1000 genomes]
rs59646103	0.94[ASN][1000 genomes]
rs60199041	0.97[ASN][1000 genomes]
rs60379144	0.91[ASN][1000 genomes]
rs61401309	0.93[ASN][1000 genomes]
rs61480935	0.96[ASN][1000 genomes]
rs6447390	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6810402	0.95[ASN][1000 genomes]
rs6823162	0.96[ASN][1000 genomes]
rs6829560	0.97[ASN][1000 genomes]
rs6835096	0.97[ASN][1000 genomes]
rs6840446	0.97[ASN][1000 genomes]
rs6850886	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6856919	0.95[ASN][1000 genomes]
rs73124353	0.95[ASN][1000 genomes]
rs73127980	0.97[ASN][1000 genomes]
rs73128001	1.00[ASN][1000 genomes]
rs73131888	0.92[ASN][1000 genomes]
rs73188331	0.92[ASN][1000 genomes]
rs73188337	0.92[ASN][1000 genomes]
rs73812465	0.86[ASN][1000 genomes]
rs7657013	0.96[ASN][1000 genomes]
rs7673477	0.95[ASN][1000 genomes]
rs7675888	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7680743	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7684987	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7689230	0.94[ASN][1000 genomes]
rs7691276	0.91[ASN][1000 genomes]
rs7699351	0.96[ASN][1000 genomes]
rs7699553	0.96[ASN][1000 genomes]
rs9291254	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs963694	0.95[ASN][1000 genomes]
rs9759704	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9994059	0.96[ASN][1000 genomes]
rs9996109	0.93[ASN][1000 genomes]
rs9997570	0.95[ASN][1000 genomes]
rs9999629	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1013488	chr4:44543808-44976123	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv915992	chr4:44705614-44972966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv432591	chr4:44922068-45017576	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv432592	chr4:44932439-45005872	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv432594	chr4:44932945-45033572	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1014721	chr4:44950223-44999607	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	nsv432595	chr4:44951672-45010972	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	nsv432596	chr4:44951672-45037672	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv594098	chr4:44955950-45004987	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv594099	chr4:44955964-45004987	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv1004138	chr4:44956309-45006323	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv2757056	chr4:44960444-45033572	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv2759250	chr4:44960444-45033572	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv594100	chr4:44961533-45004987	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
18	nsv878980	chr4:44961533-45015525	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv878981	chr4:44961533-45018583	Enhancers ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	esv2763861	chr4:44964479-45011262	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	nsv1007775	chr4:44965184-44991506	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
22	nsv1005919	chr4:44965184-45006323	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
23	nsv10488	chr4:44965278-45011616	Enhancers Strong transcription Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:44962600-44966800	Enhancers	HMEC	breast
2	chr4:44965400-44966000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:44965400-44966000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

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