Variant report

Variant	rs7675888
Chromosome Location	chr4:44940870-44940871
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 159 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs10000575	0.98[ASN][1000 genomes]
rs10007607	0.93[ASN][1000 genomes]
rs10012246	0.98[ASN][1000 genomes]
rs10012356	0.98[ASN][1000 genomes]
rs10013812	1.00[ASN][1000 genomes]
rs10013935	0.99[ASN][1000 genomes]
rs10015650	0.98[ASN][1000 genomes]
rs10015652	0.98[ASN][1000 genomes]
rs10016495	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10017095	0.97[ASN][1000 genomes]
rs10017985	0.98[ASN][1000 genomes]
rs10020374	0.99[ASN][1000 genomes]
rs10025522	0.99[ASN][1000 genomes]
rs10028195	0.99[ASN][1000 genomes]
rs10030848	0.99[ASN][1000 genomes]
rs10033860	0.97[ASN][1000 genomes]
rs10033979	0.97[ASN][1000 genomes]
rs1111981	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11933837	0.95[ASN][1000 genomes]
rs11935846	0.87[ASN][1000 genomes]
rs11935972	0.95[ASN][1000 genomes]
rs11938675	0.98[ASN][1000 genomes]
rs11944280	0.98[ASN][1000 genomes]
rs11946177	0.93[ASN][1000 genomes]
rs12505745	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12509720	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12640112	0.97[ASN][1000 genomes]
rs12641418	0.99[ASN][1000 genomes]
rs12642863	0.98[ASN][1000 genomes]
rs12643056	0.99[ASN][1000 genomes]
rs12643086	0.98[ASN][1000 genomes]
rs12646818	0.99[ASN][1000 genomes]
rs12647628	0.99[ASN][1000 genomes]
rs12649134	0.98[ASN][1000 genomes]
rs12649138	0.98[ASN][1000 genomes]
rs13105769	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13133064	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1390911	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1390924	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1390927	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1496981	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1496994	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1497005	0.86[ASN][1000 genomes]
rs1497006	0.86[ASN][1000 genomes]
rs1497007	0.84[ASN][1000 genomes]
rs1497013	1.00[ASN][1000 genomes]
rs1587239	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17608329	0.98[ASN][1000 genomes]
rs17608378	0.99[ASN][1000 genomes]
rs17608406	0.99[ASN][1000 genomes]
rs17654704	0.97[ASN][1000 genomes]
rs1908807	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2002381	0.95[ASN][1000 genomes]
rs2101913	0.95[ASN][1000 genomes]
rs2173109	0.99[ASN][1000 genomes]
rs2348808	0.98[ASN][1000 genomes]
rs2348809	0.98[ASN][1000 genomes]
rs28396281	0.95[ASN][1000 genomes]
rs28404990	0.98[ASN][1000 genomes]
rs28407439	0.98[ASN][1000 genomes]
rs28415060	0.95[ASN][1000 genomes]
rs28419289	0.95[ASN][1000 genomes]
rs28421558	0.84[ASN][1000 genomes]
rs28430557	0.91[ASN][1000 genomes]
rs28433591	0.95[ASN][1000 genomes]
rs28471010	0.99[ASN][1000 genomes]
rs28474886	0.99[ASN][1000 genomes]
rs28476627	0.86[ASN][1000 genomes]
rs28481662	1.00[ASN][1000 genomes]
rs28494119	0.98[ASN][1000 genomes]
rs28542523	0.99[ASN][1000 genomes]
rs28544196	0.86[ASN][1000 genomes]
rs28544522	0.98[ASN][1000 genomes]
rs28555525	1.00[ASN][1000 genomes]
rs28588810	1.00[ASN][1000 genomes]
rs28595122	0.91[ASN][1000 genomes]
rs28609450	0.98[ASN][1000 genomes]
rs28618344	0.86[ASN][1000 genomes]
rs28638095	0.86[ASN][1000 genomes]
rs28651070	0.95[ASN][1000 genomes]
rs28653265	0.98[ASN][1000 genomes]
rs28661605	0.84[ASN][1000 genomes]
rs28661881	0.99[ASN][1000 genomes]
rs28665855	0.99[ASN][1000 genomes]
rs28670264	1.00[ASN][1000 genomes]
rs28671037	0.98[ASN][1000 genomes]
rs28690995	0.99[ASN][1000 genomes]
rs28702818	0.99[ASN][1000 genomes]
rs28710415	0.99[ASN][1000 genomes]
rs28767196	0.98[ASN][1000 genomes]
rs28770470	0.98[ASN][1000 genomes]
rs28790942	0.98[ASN][1000 genomes]
rs28809793	0.98[ASN][1000 genomes]
rs28814269	0.98[ASN][1000 genomes]
rs2882025	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28823394	0.98[ASN][1000 genomes]
rs28827511	0.98[ASN][1000 genomes]
rs28846973	0.98[ASN][1000 genomes]
rs28862974	0.98[ASN][1000 genomes]
rs28865724	0.83[ASN][1000 genomes]
rs28868678	0.97[ASN][1000 genomes]
rs28873529	0.97[ASN][1000 genomes]
rs28896188	0.95[ASN][1000 genomes]
rs4074007	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4308399	0.98[ASN][1000 genomes]
rs4613605	0.98[ASN][1000 genomes]
rs4694791	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4695065	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695066	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55700340	0.98[ASN][1000 genomes]
rs55711177	0.98[ASN][1000 genomes]
rs56196939	0.98[ASN][1000 genomes]
rs56318819	0.98[ASN][1000 genomes]
rs56373602	0.98[ASN][1000 genomes]
rs58034832	0.86[ASN][1000 genomes]
rs58140665	1.00[ASN][1000 genomes]
rs59646103	0.99[ASN][1000 genomes]
rs60199041	0.98[ASN][1000 genomes]
rs60379144	0.86[ASN][1000 genomes]
rs61401309	0.98[ASN][1000 genomes]
rs61480935	0.99[ASN][1000 genomes]
rs6447390	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6810402	0.97[ASN][1000 genomes]
rs6823162	0.99[ASN][1000 genomes]
rs6829560	0.98[ASN][1000 genomes]
rs6835096	0.98[ASN][1000 genomes]
rs6840446	0.98[ASN][1000 genomes]
rs6850886	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6856919	0.97[ASN][1000 genomes]
rs73124353	1.00[ASN][1000 genomes]
rs73127980	0.98[ASN][1000 genomes]
rs73128001	0.95[ASN][1000 genomes]
rs73131888	0.97[ASN][1000 genomes]
rs73188331	0.97[ASN][1000 genomes]
rs73188337	0.97[ASN][1000 genomes]
rs73812465	0.81[ASN][1000 genomes]
rs7657013	0.99[ASN][1000 genomes]
rs7673477	0.98[ASN][1000 genomes]
rs7680743	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7684987	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7689230	0.99[ASN][1000 genomes]
rs7691276	0.92[ASN][1000 genomes]
rs7699351	0.99[ASN][1000 genomes]
rs7699553	0.99[ASN][1000 genomes]
rs9291254	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs963694	1.00[ASN][1000 genomes]
rs9759704	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9994059	0.99[ASN][1000 genomes]
rs9996109	0.98[ASN][1000 genomes]
rs9997570	1.00[ASN][1000 genomes]
rs9999629	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1013488	chr4:44543808-44976123	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv915992	chr4:44705614-44972966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv432591	chr4:44922068-45017576	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv432592	chr4:44932439-45005872	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv432594	chr4:44932945-45033572	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:44930000-44959400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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