Variant report

Variant	rs17654704
Chromosome Location	chr4:44930650-44930651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs10000575	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10007607	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10012246	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10012356	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10013812	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10013935	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10015650	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10015652	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10016495	0.96[ASN][1000 genomes]
rs10017095	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10017985	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10020374	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10025522	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10028195	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10030848	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10033860	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10033979	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11933837	0.92[ASN][1000 genomes]
rs11935846	0.83[ASN][1000 genomes]
rs11935972	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11938675	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11944280	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11946177	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12505745	0.95[ASN][1000 genomes]
rs12640112	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12641418	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12642863	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12643056	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12643086	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12646818	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12647628	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12649134	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12649138	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13105769	0.95[ASN][1000 genomes]
rs13133064	0.94[ASN][1000 genomes]
rs1390924	0.92[ASN][1000 genomes]
rs1390927	0.96[ASN][1000 genomes]
rs1496981	0.98[ASN][1000 genomes]
rs1497005	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1497006	0.83[ASN][1000 genomes]
rs1497007	0.81[ASN][1000 genomes]
rs1497013	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1587239	0.95[ASN][1000 genomes]
rs17608329	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17608378	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17608406	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1908807	0.92[ASN][1000 genomes]
rs2002381	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2101913	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2173109	0.96[ASN][1000 genomes]
rs2348808	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2348809	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28396281	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28404990	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28407439	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28415060	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28419289	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28421558	0.80[ASN][1000 genomes]
rs28430557	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28433591	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28471010	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28474886	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28476627	0.83[ASN][1000 genomes]
rs28481662	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28494119	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28542523	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28544196	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28544522	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28555525	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28588810	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28595122	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28609450	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28618344	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28638095	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28651070	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28653265	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28661605	0.80[ASN][1000 genomes]
rs28661881	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28665855	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28670264	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28671037	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28690995	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28702818	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28710415	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28767196	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28770470	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28790942	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28809793	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28814269	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2882025	0.97[ASN][1000 genomes]
rs28823394	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28827511	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28846973	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28862974	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28865724	0.80[ASN][1000 genomes]
rs28868678	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28873529	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28896188	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4308399	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4613605	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4695065	0.97[ASN][1000 genomes]
rs55700340	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs55711177	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56196939	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56318819	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56373602	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58034832	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58140665	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59646103	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60199041	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60379144	0.83[ASN][1000 genomes]
rs61401309	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61480935	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6447390	0.97[ASN][1000 genomes]
rs6810402	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6823162	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6829560	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6835096	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6840446	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6850886	0.96[ASN][1000 genomes]
rs6856919	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73124353	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73127980	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73128001	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73131888	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73188331	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73188337	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73812465	0.88[AMR][1000 genomes]
rs7657013	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7673477	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7675888	0.97[ASN][1000 genomes]
rs7680743	0.96[ASN][1000 genomes]
rs7684987	0.96[ASN][1000 genomes]
rs7689230	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7691276	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7699351	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7699553	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9291254	0.97[ASN][1000 genomes]
rs963694	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9759704	0.96[ASN][1000 genomes]
rs9994059	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9996109	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9997570	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9999629	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1013488	chr4:44543808-44976123	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv915992	chr4:44705614-44972966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv432591	chr4:44922068-45017576	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:44929400-44932400	Enhancers	Fetal Heart	heart
2	chr4:44929600-44931000	Enhancers	Fetal Kidney	kidney
3	chr4:44929800-44930800	Enhancers	Stomach Mucosa	stomach
4	chr4:44929800-44931000	Enhancers	Fetal Lung	lung
5	chr4:44930000-44930800	Enhancers	Fetal Intestine Small	intestine
6	chr4:44930000-44930800	Enhancers	Fetal Muscle Leg	muscle
7	chr4:44930000-44959400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:44930200-44931200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:44930400-44930800	Enhancers	Pancreas	Pancrea

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