Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KAT2B-11	chr3:21084468-21084602	NONHSAT088635

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12486350	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13068048	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13078118	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1391141	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1874654	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1969031	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34075807	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs34601502	0.80[AFR][1000 genomes]
rs35029190	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35767304	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3927160	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59490659	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767338	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6767346	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6767465	0.95[ASN][1000 genomes]
rs6770089	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6776542	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6778353	0.95[ASN][1000 genomes]
rs67985376	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6800823	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876607	chr3:20972475-21087219	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	nsv876608	chr3:21008710-21203048	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv998068	chr3:21050191-21212603	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2422219	chr3:21064893-21220097	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv589880	chr3:21083096-21144601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv589881	chr3:21083096-21173989	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv460463	chr3:21083096-21179332	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv589882	chr3:21083096-21179332	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21084200-21085000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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