Variant report

Variant	rs34601502
Chromosome Location	chr3:21094781-21094782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21088992..21091588-chr3:21092168..21094857,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12491034	0.83[AMR][1000 genomes]
rs12496105	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12636382	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12637202	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13078118	0.89[AFR][1000 genomes]
rs13098480	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13098509	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1391142	0.80[AFR][1000 genomes]
rs17007963	0.89[AMR][1000 genomes]
rs1846076	0.88[AMR][1000 genomes]
rs1969031	0.82[AFR][1000 genomes]
rs33954729	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34075807	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35663760	0.88[AMR][1000 genomes]
rs35767304	0.84[AFR][1000 genomes]
rs4019490	0.82[ASN][1000 genomes]
rs59490659	0.83[AFR][1000 genomes]
rs6770089	0.83[AFR][1000 genomes]
rs6791138	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs67985376	0.89[AFR][1000 genomes]
rs71310234	0.83[AMR][1000 genomes]
rs73036901	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629155	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9835240	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876608	chr3:21008710-21203048	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv998068	chr3:21050191-21212603	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2422219	chr3:21064893-21220097	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv589880	chr3:21083096-21144601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv589881	chr3:21083096-21173989	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv460463	chr3:21083096-21179332	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv589882	chr3:21083096-21179332	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv470472	chr3:21087219-21179332	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1007599	chr3:21089648-21212603	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1003715	chr3:21093734-21241656	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21086800-21108800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:21092000-21100600	Weak transcription	Fetal Lung	lung

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