Variant report
| Variant | rs6770089 |
|---|---|
| Chromosome Location | chr3:21085292-21085293 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12486350 | 0.88[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13068048 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13078118 | 0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1391141 | 0.80[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1391142 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1874654 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1969031 | 0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34075807 | 0.84[AFR][1000 genomes] |
| rs34601502 | 0.83[AFR][1000 genomes] |
| rs35029190 | 0.99[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs35767304 | 0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3927160 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs59490659 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6767338 | 0.88[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6767346 | 0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6767465 | 0.94[ASN][1000 genomes] |
| rs6776542 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6778353 | 0.94[ASN][1000 genomes] |
| rs67985376 | 0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6800823 | 0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73036901 | 0.80[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv876607 | chr3:20972475-21087219 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 2 | nsv876608 | chr3:21008710-21203048 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv998068 | chr3:21050191-21212603 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2422219 | chr3:21064893-21220097 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv589880 | chr3:21083096-21144601 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv589881 | chr3:21083096-21173989 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv460463 | chr3:21083096-21179332 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 8 | nsv589882 | chr3:21083096-21179332 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:21085000-21086400 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
