Variant report
| Variant | rs1396928 |
|---|---|
| Chromosome Location | chr2:115850536-115850537 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:46)
| rs_ID | r2[population] |
|---|---|
| rs10205094 | 0.89[ASN][1000 genomes] |
| rs11123274 | 0.87[ASN][1000 genomes] |
| rs11123276 | 0.89[ASN][1000 genomes] |
| rs11123280 | 0.89[ASN][1000 genomes] |
| rs11695180 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12612601 | 0.90[ASN][1000 genomes] |
| rs1396927 | 0.92[ASN][1000 genomes] |
| rs1509741 | 0.92[ASN][1000 genomes] |
| rs17040475 | 0.91[ASN][1000 genomes] |
| rs17040479 | 0.90[ASN][1000 genomes] |
| rs17043991 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs17043996 | 0.89[ASN][1000 genomes] |
| rs17044031 | 0.92[ASN][1000 genomes] |
| rs1876862 | 0.90[ASN][1000 genomes] |
| rs2420590 | 0.92[ASN][1000 genomes] |
| rs35373078 | 0.90[ASN][1000 genomes] |
| rs4848377 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4848379 | 0.90[ASN][1000 genomes] |
| rs4848380 | 0.91[ASN][1000 genomes] |
| rs4849378 | 0.90[ASN][1000 genomes] |
| rs55851152 | 0.91[ASN][1000 genomes] |
| rs56073672 | 0.91[ASN][1000 genomes] |
| rs58053621 | 0.82[ASN][1000 genomes] |
| rs60483323 | 0.91[ASN][1000 genomes] |
| rs60912714 | 0.80[ASN][1000 genomes] |
| rs61317284 | 0.89[ASN][1000 genomes] |
| rs66504724 | 0.92[ASN][1000 genomes] |
| rs6714443 | 0.84[ASN][1000 genomes] |
| rs6720237 | 0.92[ASN][1000 genomes] |
| rs6722193 | 0.92[ASN][1000 genomes] |
| rs67448492 | 0.89[ASN][1000 genomes] |
| rs6757573 | 0.90[ASN][1000 genomes] |
| rs6759370 | 0.92[ASN][1000 genomes] |
| rs73946513 | 0.90[ASN][1000 genomes] |
| rs7558976 | 0.87[ASN][1000 genomes] |
| rs7560260 | 0.89[ASN][1000 genomes] |
| rs7568691 | 0.92[ASN][1000 genomes] |
| rs7574885 | 0.92[ASN][1000 genomes] |
| rs7575500 | 0.92[ASN][1000 genomes] |
| rs7575677 | 0.89[ASN][1000 genomes] |
| rs7582562 | 0.91[ASN][1000 genomes] |
| rs7584663 | 0.90[ASN][1000 genomes] |
| rs7595736 | 0.92[ASN][1000 genomes] |
| rs958396 | 0.91[ASN][1000 genomes] |
| rs9917121 | 0.92[ASN][1000 genomes] |
| rs9917329 | 0.92[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:115850000-115850600 | Enhancers | Fetal Intestine Large | intestine |
| 2 | chr2:115850200-115850600 | Flanking Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
