Variant report
| Variant | rs6714443 |
|---|---|
| Chromosome Location | chr2:115815101-115815102 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs10205094 | 0.85[ASN][1000 genomes] |
| rs1024113 | 0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11123267 | 0.82[ASN][1000 genomes] |
| rs11123274 | 0.84[ASN][1000 genomes] |
| rs11123276 | 0.85[ASN][1000 genomes] |
| rs11695180 | 0.85[ASN][1000 genomes] |
| rs1396927 | 0.82[ASN][1000 genomes] |
| rs1396928 | 0.84[ASN][1000 genomes] |
| rs1509741 | 0.82[ASN][1000 genomes] |
| rs17040475 | 0.80[ASN][1000 genomes] |
| rs17043991 | 0.85[ASN][1000 genomes] |
| rs17043996 | 0.85[ASN][1000 genomes] |
| rs17044031 | 0.82[ASN][1000 genomes] |
| rs1876862 | 0.81[ASN][1000 genomes] |
| rs1980007 | 0.86[ASN][1000 genomes] |
| rs2055815 | 0.80[ASN][1000 genomes] |
| rs2420590 | 0.82[ASN][1000 genomes] |
| rs4848376 | 0.88[AFR][1000 genomes] |
| rs4848377 | 0.86[ASN][1000 genomes] |
| rs4848380 | 0.80[ASN][1000 genomes] |
| rs4849378 | 0.84[ASN][1000 genomes] |
| rs55851152 | 0.80[ASN][1000 genomes] |
| rs56073672 | 0.80[ASN][1000 genomes] |
| rs60483323 | 0.80[ASN][1000 genomes] |
| rs60912714 | 0.93[ASN][1000 genomes] |
| rs66504724 | 0.82[ASN][1000 genomes] |
| rs6706548 | 0.82[ASN][1000 genomes] |
| rs6720237 | 0.82[ASN][1000 genomes] |
| rs6722193 | 0.82[ASN][1000 genomes] |
| rs6757573 | 0.84[ASN][1000 genomes] |
| rs6759370 | 0.82[ASN][1000 genomes] |
| rs7423711 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7568691 | 0.82[ASN][1000 genomes] |
| rs7574885 | 0.82[ASN][1000 genomes] |
| rs7575500 | 0.82[ASN][1000 genomes] |
| rs7582562 | 0.80[ASN][1000 genomes] |
| rs7595736 | 0.82[ASN][1000 genomes] |
| rs958396 | 0.80[ASN][1000 genomes] |
| rs9917121 | 0.82[ASN][1000 genomes] |
| rs9917329 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv459030 | chr2:115800609-115834653 | Weak transcription Enhancers ZNF genes & repeats | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv459041 | chr2:115800609-115834653 | Weak transcription ZNF genes & repeats Enhancers | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv582732 | chr2:115800609-115834653 | ZNF genes & repeats Weak transcription Enhancers | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:115815000-115815400 | Enhancers | Dnd41 | blood |
