Variant report

Variant	rs7423711
Chromosome Location	chr2:115758656-115758657
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1024113	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11123267	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11893190	0.88[ASN][1000 genomes]
rs12618618	0.91[ASN][1000 genomes]
rs1509734	0.88[ASN][1000 genomes]
rs17043899	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17043991	0.95[JPT][hapmap]
rs17635169	0.87[CEU][hapmap]
rs17686193	0.84[CEU][hapmap]
rs1980007	0.98[ASN][1000 genomes]
rs2055815	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4848376	0.87[CEU][hapmap]
rs4848377	0.95[JPT][hapmap]
rs59753535	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs60912714	0.82[ASN][1000 genomes]
rs6706548	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6714443	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs74182892	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7570895	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874917	chr2:115723034-115788593	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115757400-115759600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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