Variant report
| Variant | rs4848377 |
|---|---|
| Chromosome Location | chr2:115835900-115835901 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:114735423..114737504-chr2:115835570..115838276,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234199 | Chromatin interaction |
| ENSG00000243179 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:47)
| rs_ID | r2[population] |
|---|---|
| rs10205094 | 0.91[ASN][1000 genomes] |
| rs1024113 | 0.81[ASN][1000 genomes] |
| rs1024114 | 0.87[AFR][1000 genomes] |
| rs11123274 | 0.89[ASN][1000 genomes] |
| rs11123276 | 0.91[ASN][1000 genomes] |
| rs11123280 | 0.85[ASN][1000 genomes] |
| rs11695180 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12612601 | 0.85[ASN][1000 genomes] |
| rs1396927 | 0.87[ASN][1000 genomes] |
| rs1396928 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1509741 | 0.87[ASN][1000 genomes] |
| rs17040475 | 0.86[ASN][1000 genomes] |
| rs17040479 | 0.85[ASN][1000 genomes] |
| rs17043991 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs17043996 | 0.91[ASN][1000 genomes] |
| rs17044031 | 0.87[ASN][1000 genomes] |
| rs1876862 | 0.87[ASN][1000 genomes] |
| rs2420590 | 0.87[ASN][1000 genomes] |
| rs35373078 | 0.85[ASN][1000 genomes] |
| rs4848379 | 0.85[ASN][1000 genomes] |
| rs4848380 | 0.86[ASN][1000 genomes] |
| rs4849378 | 0.85[ASN][1000 genomes] |
| rs55851152 | 0.86[ASN][1000 genomes] |
| rs56073672 | 0.86[ASN][1000 genomes] |
| rs60483323 | 0.86[ASN][1000 genomes] |
| rs60912714 | 0.82[ASN][1000 genomes] |
| rs61317284 | 0.85[ASN][1000 genomes] |
| rs66504724 | 0.87[ASN][1000 genomes] |
| rs6714443 | 0.86[ASN][1000 genomes] |
| rs6720237 | 0.88[ASN][1000 genomes] |
| rs6722193 | 0.88[ASN][1000 genomes] |
| rs67448492 | 0.85[ASN][1000 genomes] |
| rs6757573 | 0.89[ASN][1000 genomes] |
| rs6759370 | 0.88[ASN][1000 genomes] |
| rs73946513 | 0.85[ASN][1000 genomes] |
| rs7558976 | 0.83[ASN][1000 genomes] |
| rs7560260 | 0.85[ASN][1000 genomes] |
| rs7568691 | 0.88[ASN][1000 genomes] |
| rs7574885 | 0.87[ASN][1000 genomes] |
| rs7575500 | 0.87[ASN][1000 genomes] |
| rs7575677 | 0.85[ASN][1000 genomes] |
| rs7582562 | 0.86[ASN][1000 genomes] |
| rs7584663 | 0.85[ASN][1000 genomes] |
| rs7595736 | 0.88[ASN][1000 genomes] |
| rs958396 | 0.86[ASN][1000 genomes] |
| rs9917121 | 0.88[ASN][1000 genomes] |
| rs9917329 | 0.88[ASN][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
