Variant report

Variant	rs1398119
Chromosome Location	chr3:146051441-146051442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:146048795..146051583-chr3:146054776..146056566,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10935621	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1159914	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1160641	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1160642	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12494780	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12494790	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12495626	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12495688	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1512068	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512069	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606264	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1828557	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1828558	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1849256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1849260	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1912892	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2089890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2203128	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2203129	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2221849	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2221850	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35237429	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3938095	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4681311	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4681312	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4681313	0.89[EUR][1000 genomes]
rs4681314	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4681316	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55921403	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6803878	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs961834	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9836580	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9853983	0.82[AMR][1000 genomes]
rs9869588	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9881632	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3410778	chr3:146017303-146060390	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146050800-146051600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:146050800-146051600	Enhancers	Osteobl	bone
3	chr3:146051000-146051600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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