Variant report

Variant	rs9853983
Chromosome Location	chr3:146030815-146030816
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1159914	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1160641	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1160642	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12494780	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12494790	0.87[ASN][1000 genomes]
rs12495626	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12495688	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13068016	0.80[ASN][1000 genomes]
rs1398119	0.82[AMR][1000 genomes]
rs1512068	0.81[AMR][1000 genomes]
rs1512069	0.81[AMR][1000 genomes]
rs1606264	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1828557	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1828558	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1849256	0.82[AMR][1000 genomes]
rs1849260	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2089890	0.82[AMR][1000 genomes]
rs2203128	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2203129	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2221849	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2221850	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35237429	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3938095	0.87[ASN][1000 genomes]
rs4681311	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4681312	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4681313	0.85[ASN][1000 genomes]
rs4681314	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4681316	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs55921403	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6803878	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs961834	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9836580	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9869588	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9881632	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3410778	chr3:146017303-146060390	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146026600-146031200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:146026600-146031200	Weak transcription	NH-A	brain
3	chr3:146026600-146031400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:146026800-146031200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:146027000-146031000	Weak transcription	Osteobl	bone
6	chr3:146027000-146031200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:146027000-146031400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:146027000-146031400	Weak transcription	HSMMtube	muscle
9	chr3:146027200-146031400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:146027200-146031600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:146027800-146031000	Weak transcription	Hela-S3	cervix
12	chr3:146029000-146032800	Weak transcription	Liver	Liver
13	chr3:146029200-146031000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:146030400-146031400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:146030600-146031400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:146030800-146033000	Enhancers	NHLF	lung
17	chr3:146030800-146033600	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links