Variant report
| Variant | rs1399914 |
|---|---|
| Chromosome Location | chr3:161375563-161375564 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:161373878..161376279-chr3:161388444..161390253,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs1568021 | 0.98[AFR][1000 genomes] |
| rs16832749 | 1.00[AMR][1000 genomes] |
| rs16832954 | 1.00[AMR][1000 genomes] |
| rs16832967 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16833039 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2135444 | 1.00[AMR][1000 genomes] |
| rs2135445 | 1.00[AMR][1000 genomes] |
| rs2135446 | 1.00[AMR][1000 genomes] |
| rs2135447 | 1.00[AMR][1000 genomes] |
| rs61535864 | 1.00[AMR][1000 genomes] |
| rs61710096 | 1.00[AMR][1000 genomes] |
| rs6774014 | 1.00[AMR][1000 genomes] |
| rs6776579 | 1.00[AMR][1000 genomes] |
| rs6787329 | 1.00[AMR][1000 genomes] |
| rs6798679 | 1.00[AMR][1000 genomes] |
| rs6802524 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73875662 | 1.00[AMR][1000 genomes] |
| rs73875666 | 1.00[AMR][1000 genomes] |
| rs73875668 | 1.00[AMR][1000 genomes] |
| rs73875669 | 1.00[AMR][1000 genomes] |
| rs73875671 | 1.00[AMR][1000 genomes] |
| rs73875672 | 1.00[AMR][1000 genomes] |
| rs73875679 | 1.00[AMR][1000 genomes] |
| rs73875680 | 1.00[AMR][1000 genomes] |
| rs73875682 | 1.00[AMR][1000 genomes] |
| rs73875699 | 1.00[AMR][1000 genomes] |
| rs73877415 | 1.00[AMR][1000 genomes] |
| rs73877416 | 1.00[AMR][1000 genomes] |
| rs73877419 | 1.00[AMR][1000 genomes] |
| rs73877424 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73877439 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73877445 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7640549 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 2 | nsv829774 | chr3:161229405-161386919 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2422309 | chr3:161242389-161425932 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv877711 | chr3:161275848-161486665 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1004255 | chr3:161340249-161476537 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161374800-161376000 | Enhancers | Cortex derived primary cultured neurospheres | brain |
| 2 | chr3:161375400-161378400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
