Variant report

Variant	rs73877416
Chromosome Location	chr3:161353115-161353116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1399914	1.00[AMR][1000 genomes]
rs16832749	1.00[AMR][1000 genomes]
rs16832954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16832967	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16833039	1.00[AMR][1000 genomes]
rs2135444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2135445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2135446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2135447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61535864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61710096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6774014	1.00[AMR][1000 genomes]
rs6776579	1.00[AMR][1000 genomes]
rs6787329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6798679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6802524	1.00[AMR][1000 genomes]
rs73875662	1.00[AMR][1000 genomes]
rs73875666	1.00[AMR][1000 genomes]
rs73875668	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875669	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875679	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877415	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877424	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877439	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877445	1.00[AMR][1000 genomes]
rs7640549	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1004255	chr3:161340249-161476537	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2755105	chr3:161349991-161371789	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161351000-161355200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:161351400-161355200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr3:161351800-161353200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:161351800-161353200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:161353000-161353200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:161353000-161353400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:161353000-161353600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr3:161353000-161353800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr3:161353000-161353800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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