Variant report

Variant	rs73875669
Chromosome Location	chr3:161303141-161303142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1399914	1.00[AMR][1000 genomes]
rs16832749	1.00[AMR][1000 genomes]
rs16832954	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16832967	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16833039	1.00[AMR][1000 genomes]
rs2135444	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2135445	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2135446	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2135447	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61535864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61710096	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6774014	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6776579	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6787329	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6798679	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6802524	1.00[AMR][1000 genomes]
rs73875662	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875666	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875671	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875672	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875679	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875680	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875682	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875699	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877415	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877416	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877419	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877424	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877439	1.00[AMR][1000 genomes]
rs73877445	1.00[AMR][1000 genomes]
rs7640549	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161299200-161304600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:161299600-161304800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:161302000-161304600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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