Variant report

Variant	rs1401185
Chromosome Location	chr11:93811287-93811288
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1518559	1.00[AMR][1000 genomes]
rs59370940	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61453521	1.00[AMR][1000 genomes]
rs7107513	1.00[AMR][1000 genomes]
rs7949125	1.00[AMR][1000 genomes]
rs7950055	1.00[AMR][1000 genomes]
rs908750	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93794800-93816400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:93801800-93812800	Weak transcription	Aorta	Aorta
3	chr11:93802400-93833400	Weak transcription	HMEC	breast
4	chr11:93802600-93816600	Weak transcription	NHEK	skin
5	chr11:93809800-93811800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:93810600-93812000	Enhancers	K562	blood
7	chr11:93810800-93811400	Enhancers	Primary hematopoietic stem cells	blood
8	chr11:93810800-93811400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:93810800-93811400	Enhancers	Fetal Heart	heart
10	chr11:93810800-93811600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:93810800-93813200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:93810800-93813200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:93811000-93811400	Enhancers	Stomach Mucosa	stomach
14	chr11:93811000-93811600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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