Variant report

Variant	rs59370940
Chromosome Location	chr11:93871438-93871439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1401185	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1518559	1.00[AMR][1000 genomes]
rs61453521	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7107513	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7116597	0.82[AFR][1000 genomes]
rs7949125	1.00[AMR][1000 genomes]
rs7950055	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs908750	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv508651	chr11:93834300-93880470	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	esv989619	chr11:93861937-93872912	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
10	nsv517664	chr11:93866147-93913036	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93864000-93879800	Weak transcription	Primary T cells from cord blood	blood
2	chr11:93864400-93872800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:93864800-93873200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:93865400-93881600	Weak transcription	Fetal Intestine Small	intestine
5	chr11:93865600-93872000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:93865600-93874200	Weak transcription	Brain Anterior Caudate	brain
7	chr11:93865600-93875000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:93865600-93875000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:93865600-93875200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:93865800-93874400	Weak transcription	HepG2	liver
11	chr11:93866600-93872000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:93867000-93879800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr11:93867200-93872800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:93867200-93875200	Weak transcription	Esophagus	oesophagus
15	chr11:93867200-93882000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:93867600-93875000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:93867600-93880000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr11:93868200-93875400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:93868200-93886600	Weak transcription	Fetal Brain Female	brain
20	chr11:93868400-93872800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:93868400-93875000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:93868400-93875000	Weak transcription	Brain Germinal Matrix	brain
23	chr11:93868400-93875000	Weak transcription	Gastric	stomach
24	chr11:93868400-93875200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:93868400-93880600	Weak transcription	Fetal Thymus	thymus
26	chr11:93868600-93872600	Weak transcription	Right Atrium	heart
27	chr11:93868600-93874800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:93868600-93875000	Weak transcription	Pancreas	Pancrea
29	chr11:93868600-93879400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr11:93868800-93872600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr11:93868800-93872800	Weak transcription	Small Intestine	intestine
32	chr11:93868800-93881000	Weak transcription	Fetal Intestine Large	intestine
33	chr11:93868800-93883800	Weak transcription	Primary B cells from cord blood	blood
34	chr11:93869000-93872600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:93869000-93872800	Weak transcription	Ovary	ovary
36	chr11:93869000-93875000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:93869000-93875000	Weak transcription	Fetal Stomach	stomach
38	chr11:93869000-93875400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr11:93869000-93877400	Weak transcription	Liver	Liver
40	chr11:93869200-93871600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
41	chr11:93869200-93872800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:93869200-93872800	Weak transcription	GM12878-XiMat	blood
43	chr11:93869200-93874400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:93869400-93872200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:93869400-93873000	Weak transcription	Stomach Mucosa	stomach
46	chr11:93869400-93874800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:93869400-93875200	Weak transcription	Aorta	Aorta
48	chr11:93869400-93877600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr11:93869600-93872200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr11:93869600-93872400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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