Variant report

Variant	rs1403439
Chromosome Location	chr3:34903924-34903925
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12163569	0.92[ASN][1000 genomes]
rs1522974	0.91[ASN][1000 genomes]
rs1916228	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6771520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7616192	0.89[ASN][1000 genomes]
rs7632967	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638324	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9815783	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9837182	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3415700	chr3:34806371-34914306	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34898200-34905600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:34898200-34906600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:34898400-34904000	Weak transcription	Fetal Thymus	thymus
4	chr3:34898400-34906200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:34901800-34905200	Enhancers	Fetal Brain Male	brain
6	chr3:34902000-34905200	Weak transcription	NH-A	brain
7	chr3:34902000-34905400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:34903000-34904000	Enhancers	Fetal Brain Female	brain
9	chr3:34903400-34904600	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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