Variant report

Variant	rs9815783
Chromosome Location	chr3:34897759-34897760
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12163569	0.91[ASN][1000 genomes]
rs1403439	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1522974	0.93[ASN][1000 genomes]
rs1916228	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6771520	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7616192	0.91[ASN][1000 genomes]
rs7632967	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9837182	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834655	chr3:34752929-34898824	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3415700	chr3:34806371-34914306	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv432407	chr3:34869616-34898125	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34893200-34897800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:34896400-34898200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:34896600-34898600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:34897000-34898400	Enhancers	Fetal Muscle Leg	muscle
5	chr3:34897000-34898400	Enhancers	Fetal Thymus	thymus
6	chr3:34897000-34898800	Enhancers	Fetal Heart	heart
7	chr3:34897200-34898000	Enhancers	Fetal Brain Female	brain
8	chr3:34897200-34898000	Enhancers	Fetal Stomach	stomach
9	chr3:34897400-34898200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:34897400-34898400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:34897400-34898600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:34897400-34898600	Enhancers	Fetal Brain Male	brain
13	chr3:34897400-34898600	Enhancers	Dnd41	blood
14	chr3:34897400-34899000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr3:34897400-34900600	Enhancers	Fetal Intestine Large	intestine
16	chr3:34897600-34898200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:34897600-34898200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr3:34897600-34898200	Enhancers	Thymus	Thymus
19	chr3:34897600-34898800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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