Variant report

Variant	rs7632967
Chromosome Location	chr3:34906302-34906303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12163569	0.92[ASN][1000 genomes]
rs1403439	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1522974	0.91[ASN][1000 genomes]
rs1916228	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6771520	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7616192	0.89[ASN][1000 genomes]
rs7638324	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs9815783	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9837182	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3415700	chr3:34806371-34914306	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34898200-34906600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:34905400-34906800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:34905400-34907400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:34905400-34907600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:34905600-34907600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:34906000-34906400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:34906200-34906800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:34906200-34907400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr3:34906200-34907400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:34906200-34907600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:34906200-34907600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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