Variant report

Variant	rs1403922
Chromosome Location	chr6:69538416-69538417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56112539	0.94[AFR][1000 genomes]
rs6911451	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6921127	0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6921402	0.82[AFR][1000 genomes]
rs73745891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747809	0.96[AFR][1000 genomes]
rs7754061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7757973	0.92[YRI][hapmap];0.94[AFR][1000 genomes]
rs7768205	0.87[AFR][1000 genomes]
rs7771687	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs9942434	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69532800-69548000	Weak transcription	Fetal Lung	lung
2	chr6:69536800-69547800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69537000-69545000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:69537000-69545800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:69538000-69539600	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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