Variant report

Variant	rs9942434
Chromosome Location	chr6:69601172-69601173
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1403922	0.92[YRI][hapmap]
rs56112539	0.84[AFR][1000 genomes]
rs6911451	0.92[YRI][hapmap]
rs6921127	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs73747809	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747873	1.00[AMR][1000 genomes]
rs7757973	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7768205	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771687	0.92[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886133	chr6:69549897-69610281	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv886134	chr6:69571053-69605682	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886135	chr6:69571053-69606748	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv528106	chr6:69581991-69610281	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv886136	chr6:69598297-69654650	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69591600-69602400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69600800-69601200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:69600800-69601200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:69600800-69601600	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:69601000-69602200	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links