Variant report

Variant	rs7757973
Chromosome Location	chr6:69549271-69549272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1403922	0.92[YRI][hapmap];0.94[AFR][1000 genomes]
rs56112539	1.00[AFR][1000 genomes]
rs6911451	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs6921127	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6921402	0.87[AFR][1000 genomes]
rs73745891	0.94[AFR][1000 genomes]
rs73747809	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747820	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747873	1.00[AMR][1000 genomes]
rs7754061	0.94[AFR][1000 genomes]
rs7768205	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771687	1.00[ASW][hapmap];0.95[LWK][hapmap];0.95[MKK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9942434	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69546600-69550800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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