Variant report

Variant	rs1406713
Chromosome Location	chr15:93461263-93461264
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93460439..93463062-chr15:93468763..93470874,2	MCF-7	breast:
2	chr15:93346072..93348762-chr15:93459869..93461436,3	K562	blood:
3	chr15:93339283..93342293-chr15:93459393..93462402,3	MCF-7	breast:
4	chr15:93333327..93367027-chr15:93419774..93462750,363	K562	blood:
5	chr15:93459946..93461504-chr15:93479253..93480891,2	MCF-7	breast:
6	chr15:93344712..93371031-chr15:93418700..93467618,365	MCF-7	breast:
7	chr15:93340259..93341092-chr15:93461214..93462175,6	K562	blood:
8	chr15:93360172..93364704-chr15:93459982..93465049,6	MCF-7	breast:
9	chr15:93443429..93444062-chr15:93460752..93461581,2	Hela-S3	cervix:
10	chr15:93459389..93462852-chr15:93472444..93474181,3	K562	blood:
11	chr15:93340168..93341091-chr15:93461034..93461984,5	MCF-7	breast:
12	chr15:93350620..93356582-chr15:93455419..93466792,23	MCF-7	breast:
13	chr15:93352026..93352933-chr15:93460903..93461819,3	MCF-7	breast:
14	chr15:93461235..93463110-chr15:93467839..93470762,2	K562	blood:
15	chr15:93459868..93463900-chr15:93464643..93468863,9	K562	blood:
16	chr15:93339719..93342145-chr15:93460930..93462920,3	MCF-7	breast:
17	chr15:93351934..93352899-chr15:93460819..93461743,4	MCF-7	breast:
18	chr15:93352539..93354276-chr15:93460171..93462164,2	K562	blood:
19	chr15:93352002..93352975-chr15:93460874..93461822,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000173575	Chromatin interaction
ENSG00000258922	Chromatin interaction
ENSG00000185442	Chromatin interaction
ENSG00000258527	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11074121	0.81[YRI][hapmap]
rs12900461	0.80[YRI][hapmap]
rs12915582	0.82[YRI][hapmap]
rs1371390	0.82[YRI][hapmap];0.84[AMR][1000 genomes]
rs1371391	0.82[YRI][hapmap]
rs1881837	0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2033847	0.82[YRI][hapmap]
rs4778059	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6497008	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6497012	0.81[YRI][hapmap]
rs7170644	1.00[JPT][hapmap]
rs7173849	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
6	nsv1047496	chr15:93412778-93475878	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
7	nsv1036560	chr15:93413594-93462163	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
8	nsv530847	chr15:93444024-93555676	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
9	nsv917347	chr15:93444094-93586814	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93451800-93464000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr15:93454000-93464000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:93455600-93464400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:93455600-93464800	Weak transcription	Fetal Brain Female	brain
5	chr15:93456600-93461600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:93457000-93489800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:93457200-93464000	Weak transcription	Gastric	stomach
8	chr15:93457800-93464200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:93458200-93461800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:93458200-93463600	Weak transcription	Small Intestine	intestine
11	chr15:93458400-93462200	Weak transcription	Colonic Mucosa	Colon
12	chr15:93458400-93463600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:93458800-93461800	Genic enhancers	HepG2	liver
14	chr15:93459000-93461600	Genic enhancers	Primary T cells fromperipheralblood	blood
15	chr15:93459200-93461400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:93459200-93461600	Genic enhancers	Primary B cells from peripheral blood	blood
17	chr15:93459200-93461600	Flanking Active TSS	Hela-S3	cervix
18	chr15:93459400-93461400	Enhancers	Placenta	Placenta
19	chr15:93459600-93463000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr15:93459800-93463600	Enhancers	Primary T cells from cord blood	blood
21	chr15:93460000-93461400	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:93460000-93462200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr15:93460000-93462800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:93460000-93464000	Weak transcription	Right Ventricle	heart
25	chr15:93460000-93464200	Weak transcription	Esophagus	oesophagus
26	chr15:93460000-93464200	Weak transcription	Spleen	Spleen
27	chr15:93460400-93461400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
28	chr15:93460400-93462600	Enhancers	Fetal Intestine Large	intestine
29	chr15:93460600-93461400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:93460600-93461400	Genic enhancers	Fetal Thymus	thymus
31	chr15:93460600-93461400	Genic enhancers	HSMMtube	muscle
32	chr15:93460600-93461400	Transcr. at gene 5' and 3'	NHEK	skin
33	chr15:93460600-93461600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr15:93460600-93461600	Enhancers	Brain Germinal Matrix	brain
35	chr15:93460600-93461600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr15:93460600-93461800	Enhancers	Primary hematopoietic stem cells	blood
37	chr15:93460600-93462600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:93460600-93466400	Genic enhancers	Fetal Intestine Small	intestine
39	chr15:93460800-93461400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr15:93460800-93461400	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:93460800-93461400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
42	chr15:93460800-93461400	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
43	chr15:93460800-93461600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:93460800-93461600	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr15:93460800-93461600	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr15:93460800-93461600	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr15:93460800-93461600	Active TSS	Right Atrium	heart
48	chr15:93460800-93461600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
49	chr15:93460800-93461600	Flanking Active TSS	HUVEC	blood vessel
50	chr15:93460800-93461600	Transcr. at gene 5' and 3'	K562	blood

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