Variant report

Variant	rs4778059
Chromosome Location	chr15:93459112-93459113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93456642..93459618-chr15:93553215..93555161,2	K562	blood:
2	chr15:93333327..93367027-chr15:93419774..93462750,363	K562	blood:
3	chr15:93344712..93371031-chr15:93418700..93467618,365	MCF-7	breast:
4	chr15:93345270..93347540-chr15:93458175..93460933,2	MCF-7	breast:
5	chr15:93350620..93356582-chr15:93455419..93466792,23	MCF-7	breast:
6	chr15:93394824..93396394-chr15:93458350..93461084,2	K562	blood:

Variant related genes	Relation type
ENSG00000258527	Chromatin interaction
ENSG00000258922	Chromatin interaction
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1371390	0.84[AMR][1000 genomes]
rs1406713	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881837	0.84[AMR][1000 genomes]
rs6497008	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
6	nsv1047496	chr15:93412778-93475878	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
7	nsv1036560	chr15:93413594-93462163	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
8	nsv530847	chr15:93444024-93555676	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
9	nsv917347	chr15:93444094-93586814	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93448600-93459200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:93449800-93460800	Enhancers	Stomach Mucosa	stomach
3	chr15:93450600-93459600	Genic enhancers	Fetal Thymus	thymus
4	chr15:93451800-93464000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:93452000-93461000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:93453800-93459400	Genic enhancers	K562	blood
7	chr15:93454000-93460600	Weak transcription	Ovary	ovary
8	chr15:93454000-93464000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr15:93454200-93459800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr15:93454200-93460600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:93454200-93460600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:93454200-93460800	Enhancers	Adipose Nuclei	Adipose
13	chr15:93454600-93460600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr15:93454800-93460000	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr15:93455000-93459200	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr15:93455000-93459800	Weak transcription	Aorta	Aorta
17	chr15:93455200-93459400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:93455400-93460600	Weak transcription	Fetal Lung	lung
19	chr15:93455600-93459200	Weak transcription	Esophagus	oesophagus
20	chr15:93455600-93464400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr15:93455600-93464800	Weak transcription	Fetal Brain Female	brain
22	chr15:93456000-93459400	Enhancers	Osteobl	bone
23	chr15:93456200-93459200	Weak transcription	Right Ventricle	heart
24	chr15:93456200-93460600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:93456400-93459200	Enhancers	NH-A	brain
26	chr15:93456400-93459800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr15:93456600-93459200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:93456600-93461600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:93456800-93459400	Genic enhancers	HUVEC	blood vessel
30	chr15:93457000-93459400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr15:93457000-93460200	Weak transcription	Lung	lung
32	chr15:93457000-93489800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:93457200-93459200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr15:93457200-93459200	Flanking Active TSS	Primary B cells from cord blood	blood
35	chr15:93457200-93459200	Weak transcription	Brain Germinal Matrix	brain
36	chr15:93457200-93459200	Weak transcription	Pancreas	Pancrea
37	chr15:93457200-93459200	Weak transcription	Spleen	Spleen
38	chr15:93457200-93459400	Enhancers	Fetal Kidney	kidney
39	chr15:93457200-93459800	Weak transcription	Fetal Stomach	stomach
40	chr15:93457200-93464000	Weak transcription	Gastric	stomach
41	chr15:93457400-93459400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr15:93457400-93459600	Genic enhancers	HSMM	muscle
43	chr15:93457400-93459800	Flanking Active TSS	Primary T cells from cord blood	blood
44	chr15:93457600-93459200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr15:93457800-93459200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:93457800-93459200	Enhancers	Hela-S3	cervix
47	chr15:93457800-93459400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
48	chr15:93457800-93459600	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr15:93457800-93461000	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr15:93457800-93464200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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