Variant report

Variant	rs1881837
Chromosome Location	chr15:93465187-93465188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr15:93464657-93465508	A549	lung:	n/a	chr15:93465191-93465198 chr15:93465191-93465199 chr15:93465190-93465200 chr15:93465185-93465194 chr15:93465190-93465200 chr15:93465281-93465289 chr15:93465191-93465199
2	POLR2A	chr15:93463603-93465528	K562	blood:	n/a	n/a
3	ELK1	chr15:93465179-93465313	GM12878	blood:	n/a	n/a
4	STAT3	chr15:93464630-93465317	MCF10A-Er-Src	breast:	n/a	chr15:93464667-93464690 chr15:93464682-93464705
5	FOS	chr15:93463882-93465510	MCF10A-Er-Src	breast:	n/a	chr15:93465191-93465198 chr15:93465191-93465199 chr15:93465190-93465200 chr15:93465185-93465194 chr15:93465190-93465200 chr15:93465281-93465289 chr15:93465191-93465199
6	POLR2A	chr15:93463583-93466834	K562	blood:	n/a	n/a
7	FOS	chr15:93464073-93465478	MCF10A-Er-Src	breast:	n/a	chr15:93465191-93465198 chr15:93465191-93465199 chr15:93465190-93465200 chr15:93465185-93465194 chr15:93465190-93465200 chr15:93465281-93465289 chr15:93465191-93465199
8	POLR2A	chr15:93464339-93465399	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr15:93464004-93465380	GM12892	blood:	n/a	n/a
10	POLR2A	chr15:93464781-93465263	MCF10A-Er-Src	breast:	n/a	n/a
11	CEBPB	chr15:93464573-93465601	HCT-116	colon:	n/a	n/a
12	POLR2A	chr15:93464708-93465323	K562	blood:	n/a	n/a
13	SRF	chr15:93464744-93465596	HCT-116	colon:	n/a	n/a
14	SP1	chr15:93464473-93465656	HCT-116	colon:	n/a	n/a
15	POLR2A	chr15:93465059-93465409	MCF-7	breast:	n/a	n/a
16	CBX3	chr15:93464743-93465404	HCT-116	colon:	n/a	n/a
17	POLR2A	chr15:93463691-93465348	PANC-1	pancreas:	n/a	n/a
18	POLR2A	chr15:93463784-93465404	PANC-1	pancreas:	n/a	n/a
19	YY1	chr15:93465008-93465311	HCT-116	colon:	n/a	n/a
20	BCL3	chr15:93465047-93465333	GM12878	blood:	n/a	chr15:93465190-93465199
21	STAT3	chr15:93465004-93465460	MCF10A-Er-Src	breast:	n/a	n/a
22	MYC	chr15:93464741-93465564	MCF10A-Er-Src	breast:	n/a	n/a
23	FOSL1	chr15:93464757-93465568	HCT-116	colon:	n/a	chr15:93465191-93465198 chr15:93465191-93465199 chr15:93465190-93465200 chr15:93465185-93465194 chr15:93465190-93465200 chr15:93465281-93465289 chr15:93465191-93465199
24	POLR2A	chr15:93463568-93466760	U87	brain:	n/a	n/a
25	FOSL2	chr15:93464941-93465494	MCF-7	breast:	n/a	chr15:93465191-93465198 chr15:93465191-93465199 chr15:93465190-93465200 chr15:93465185-93465194 chr15:93465190-93465200 chr15:93465281-93465289 chr15:93465191-93465199
26	POLR2A	chr15:93463008-93472730	K562	blood:	n/a	n/a
27	WRNIP1	chr15:93464064-93465331	GM12878	blood:	n/a	n/a
28	RFX5	chr15:93464637-93465418	Hela-S3	cervix:	n/a	n/a
29	STAT3	chr15:93464622-93465462	MCF10A-Er-Src	breast:	n/a	chr15:93464667-93464690 chr15:93464682-93464705
30	POLR2A	chr15:93464841-93465465	HUVEC	blood vessel:	n/a	n/a
31	NFATC1	chr15:93464782-93465507	GM12878	blood:	n/a	n/a
32	POLR2A	chr15:93464686-93466113	GM12892	blood:	n/a	n/a
33	POLR2A	chr15:93464107-93465337	GM12891	blood:	n/a	n/a
34	POLR2A	chr15:93464888-93465346	HCT-116	colon:	n/a	n/a
35	STAT3	chr15:93464558-93465463	MCF10A-Er-Src	breast:	n/a	chr15:93464667-93464690 chr15:93464682-93464705
36	JUND	chr15:93464795-93465727	HCT-116	colon:	n/a	chr15:93465191-93465198 chr15:93465191-93465199 chr15:93465190-93465200 chr15:93465185-93465194 chr15:93465190-93465200 chr15:93465281-93465289 chr15:93465191-93465199
37	POLR2A	chr15:93465103-93466180	U87	brain:	n/a	n/a
38	E2F4	chr15:93465124-93465463	MCF10A-Er-Src	breast:	n/a	n/a
39	CEBPB	chr15:93465060-93465443	IMR90	lung:	n/a	n/a
40	FOS	chr15:93464835-93465546	HUVEC	blood vessel:	n/a	chr15:93465191-93465198 chr15:93465191-93465199 chr15:93465190-93465200 chr15:93465185-93465194 chr15:93465190-93465200 chr15:93465281-93465289 chr15:93465191-93465199
41	POLR2A	chr15:93464691-93465275	GM12891	blood:	n/a	n/a
42	SIN3AK20	chr15:93464464-93465536	HCT-116	colon:	n/a	n/a
43	MYC	chr15:93465079-93465445	MCF10A-Er-Src	breast:	n/a	n/a
44	POLR2A	chr15:93464955-93465365	GM12892	blood:	n/a	n/a
45	POLR2A	chr15:93463684-93466928	GM12891	blood:	n/a	n/a
46	FOSL1	chr15:93464532-93465665	HCT-116	colon:	n/a	chr15:93465191-93465198 chr15:93465191-93465199 chr15:93465190-93465200 chr15:93465185-93465194 chr15:93465190-93465200 chr15:93465281-93465289 chr15:93465191-93465199
47	BACH1	chr15:93465100-93465408	K562	blood:	n/a	n/a
48	POLR2A	chr15:93463573-93465288	GM12878	blood:	n/a	n/a
49	CEBPB	chr15:93465128-93465402	A549	lung:	n/a	n/a
50	FOSL2	chr15:93464994-93465359	HepG2	liver:	n/a	chr15:93465191-93465198 chr15:93465191-93465199 chr15:93465190-93465200 chr15:93465185-93465194 chr15:93465190-93465200 chr15:93465281-93465289 chr15:93465191-93465199

No.	Distal block	Cell Line	Cell type
1	chr15:93344712..93371031-chr15:93418700..93467618,365	MCF-7	breast:
2	chr15:93347226..93350141-chr15:93462968..93465327,2	MCF-7	breast:
3	chr15:93463262..93465230-chr15:93468771..93470893,2	K562	blood:
4	chr15:93350620..93356582-chr15:93455419..93466792,23	MCF-7	breast:
5	chr15:93464070..93466374-chr15:93470199..93472633,2	MCF-7	breast:
6	chr15:93463483..93466768-chr15:93471204..93475396,3	MCF-7	breast:
7	chr15:93351614..93354047-chr15:93463305..93465417,2	K562	blood:

Variant related genes	Relation type
CHD2	TF binding region
ENSG00000185442	Chromatin interaction
ENSG00000258922	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1025768	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11074121	0.85[CEU][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11074122	0.85[CEU][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs11856160	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs12900461	0.93[YRI][hapmap];0.83[EUR][1000 genomes]
rs12915582	0.85[CEU][hapmap];0.89[YRI][hapmap];0.83[EUR][1000 genomes]
rs1371390	0.89[YRI][hapmap]
rs1371391	0.85[CEU][hapmap];0.89[YRI][hapmap];0.83[EUR][1000 genomes]
rs1406713	0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1470071	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2033847	0.85[CEU][hapmap];0.89[YRI][hapmap];0.83[EUR][1000 genomes]
rs2388023	0.80[EUR][1000 genomes]
rs2388024	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4551987	0.82[AMR][1000 genomes]
rs4777755	0.85[CEU][hapmap];0.85[YRI][hapmap];0.81[EUR][1000 genomes]
rs4778053	0.92[CEU][hapmap]
rs4778059	0.84[AMR][1000 genomes]
rs62023121	0.92[EUR][1000 genomes]
rs62023144	0.87[EUR][1000 genomes]
rs62023145	0.85[EUR][1000 genomes]
rs6497008	0.80[AMR][1000 genomes]
rs6497012	0.85[CEU][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7173849	0.85[CEU][hapmap];0.93[YRI][hapmap];0.83[EUR][1000 genomes]
rs7180285	0.85[CEU][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8026638	0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
6	nsv1047496	chr15:93412778-93475878	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
7	nsv530847	chr15:93444024-93555676	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
8	nsv917347	chr15:93444094-93586814	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93457000-93489800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93460600-93466400	Genic enhancers	Fetal Intestine Small	intestine
3	chr15:93461200-93465600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:93461200-93465600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:93461200-93465800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr15:93461200-93466600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr15:93461200-93467200	Enhancers	Stomach Mucosa	stomach
8	chr15:93461200-93467400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr15:93461200-93467600	Weak transcription	Fetal Brain Male	brain
10	chr15:93461200-93467600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr15:93461200-93471600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:93461600-93466000	Enhancers	Liver	Liver
13	chr15:93461600-93467600	Enhancers	Brain Cingulate Gyrus	brain
14	chr15:93461600-93471600	Weak transcription	Ovary	ovary
15	chr15:93461600-93486800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:93461600-93489200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:93462000-93465600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:93462000-93474800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:93462200-93465800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:93462200-93466400	Enhancers	Fetal Heart	heart
21	chr15:93462600-93466600	Enhancers	Brain Angular Gyrus	brain
22	chr15:93462800-93466000	Genic enhancers	HSMM	muscle
23	chr15:93463000-93466000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:93463000-93466200	Genic enhancers	HUES6 Cell Line	embryonic stem cell
25	chr15:93463000-93466200	Genic enhancers	K562	blood
26	chr15:93463000-93466400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:93463000-93466400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
28	chr15:93463000-93466400	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr15:93463000-93466400	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr15:93463000-93466600	Genic enhancers	HepG2	liver
31	chr15:93463000-93466600	Genic enhancers	Osteobl	bone
32	chr15:93463200-93465400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr15:93463200-93466200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr15:93463200-93466600	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr15:93463200-93466600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:93463200-93468000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:93463200-93486800	Strong transcription	Dnd41	blood
38	chr15:93463400-93465200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:93463400-93465800	Enhancers	Rectal Smooth Muscle	rectum
40	chr15:93463400-93465800	Genic enhancers	NH-A	brain
41	chr15:93463400-93467600	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr15:93463600-93465200	Enhancers	Brain Germinal Matrix	brain
43	chr15:93463600-93465200	Enhancers	NHLF	lung
44	chr15:93463600-93466400	Enhancers	Brain Substantia Nigra	brain
45	chr15:93463600-93466600	Genic enhancers	Fetal Thymus	thymus
46	chr15:93463600-93466800	Genic enhancers	Primary B cells from peripheral blood	blood
47	chr15:93463600-93467800	Enhancers	Small Intestine	intestine
48	chr15:93463600-93470200	Genic enhancers	Fetal Intestine Large	intestine
49	chr15:93463800-93465600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:93463800-93465800	Enhancers	Muscle Satellite Cultured Cells	--

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