Variant report

Variant	rs4777755
Chromosome Location	chr15:93510603-93510604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:93510204-93510704	K562	blood:	n/a	n/a

Variant related genes	Relation type
CHD2	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10152723	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1025768	0.82[ASW][hapmap];0.92[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11074121	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11074122	0.82[ASW][hapmap];0.85[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11856160	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs12900461	0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12915582	0.88[ASW][hapmap];0.85[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1371390	0.83[MEX][hapmap];0.82[AMR][1000 genomes]
rs1371391	0.88[ASW][hapmap];0.85[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1470071	0.88[ASW][hapmap];0.80[CEU][hapmap];0.93[GIH][hapmap];0.81[LWK][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1881837	0.85[CEU][hapmap];0.85[YRI][hapmap];0.81[EUR][1000 genomes]
rs2033847	0.82[ASW][hapmap];0.85[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2388024	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4778053	0.92[CEU][hapmap];0.82[MEX][hapmap]
rs62023121	0.84[EUR][1000 genomes]
rs62023144	0.94[EUR][1000 genomes]
rs62023145	0.92[EUR][1000 genomes]
rs6497012	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7173849	0.85[CEU][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7180285	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8026638	0.92[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
2	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
3	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
4	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv530847	chr15:93444024-93555676	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
6	nsv917347	chr15:93444094-93586814	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4777755	ZNF710	cis	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93493200-93512200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:93493200-93533000	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr15:93493200-93536000	Strong transcription	HSMM	muscle
4	chr15:93493200-93571000	Strong transcription	Dnd41	blood
5	chr15:93493200-93571200	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr15:93493400-93511800	Strong transcription	Adipose Nuclei	Adipose
7	chr15:93493400-93511800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr15:93493400-93548000	Strong transcription	Muscle Satellite Cultured Cells	--
9	chr15:93493400-93568600	Strong transcription	Liver	Liver
10	chr15:93493400-93569600	Strong transcription	Placenta	Placenta
11	chr15:93493400-93571000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:93493400-93571000	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr15:93493600-93521600	Strong transcription	Osteobl	bone
14	chr15:93493600-93523400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:93493600-93571400	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:93493800-93522400	Strong transcription	Primary B cells from peripheral blood	blood
17	chr15:93493800-93532600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:93493800-93561400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr15:93493800-93571400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:93494000-93512400	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr15:93494000-93512600	Weak transcription	Aorta	Aorta
22	chr15:93494000-93520800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr15:93494000-93568200	Strong transcription	Fetal Thymus	thymus
24	chr15:93494000-93570400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr15:93494000-93570800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr15:93494000-93571000	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr15:93494000-93571400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:93494200-93512400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:93494400-93540600	Strong transcription	Primary T cells from cord blood	blood
30	chr15:93495000-93524800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr15:93496600-93525800	Weak transcription	Stomach Mucosa	stomach
32	chr15:93497600-93517800	Weak transcription	Esophagus	oesophagus
33	chr15:93499400-93512400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:93500000-93512400	Weak transcription	Gastric	stomach
35	chr15:93500200-93512000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:93500200-93512400	Weak transcription	Spleen	Spleen
37	chr15:93500600-93512200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr15:93501400-93524000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr15:93501600-93512400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr15:93501600-93521600	Strong transcription	NH-A	brain
41	chr15:93502400-93523600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr15:93503000-93512000	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr15:93503000-93512400	Weak transcription	Brain Angular Gyrus	brain
44	chr15:93503000-93512400	Weak transcription	Psoas Muscle	Psoas
45	chr15:93503200-93512200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr15:93504000-93523400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr15:93504000-93567800	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr15:93504400-93511600	Strong transcription	HSMMtube	muscle
49	chr15:93504600-93513800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr15:93504800-93515400	Weak transcription	Lung	lung

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