Variant report

Variant	rs62023121
Chromosome Location	chr15:93459453-93459454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93456642..93459618-chr15:93553215..93555161,2	K562	blood:
2	chr15:93339283..93342293-chr15:93459393..93462402,3	MCF-7	breast:
3	chr15:93333327..93367027-chr15:93419774..93462750,363	K562	blood:
4	chr15:93344712..93371031-chr15:93418700..93467618,365	MCF-7	breast:
5	chr15:93455340..93459027-chr15:93459316..93461094,3	MCF-7	breast:
6	chr15:93345270..93347540-chr15:93458175..93460933,2	MCF-7	breast:
7	chr15:93459389..93462852-chr15:93472444..93474181,3	K562	blood:
8	chr15:93350620..93356582-chr15:93455419..93466792,23	MCF-7	breast:
9	chr15:93459389..93460980-chr15:93471786..93474181,2	K562	blood:
10	chr15:93394824..93396394-chr15:93458350..93461084,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000258922	Chromatin interaction
ENSG00000258527	Chromatin interaction
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11856160	0.94[EUR][1000 genomes]
rs1470071	0.84[EUR][1000 genomes]
rs1881837	0.92[EUR][1000 genomes]
rs2388023	0.83[EUR][1000 genomes]
rs2388024	0.84[EUR][1000 genomes]
rs4777755	0.84[EUR][1000 genomes]
rs4778053	0.82[EUR][1000 genomes]
rs62023154	0.89[AFR][1000 genomes]
rs7180285	0.84[EUR][1000 genomes]
rs8026638	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
6	nsv1047496	chr15:93412778-93475878	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
7	nsv1036560	chr15:93413594-93462163	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
8	nsv530847	chr15:93444024-93555676	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
9	nsv917347	chr15:93444094-93586814	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93449800-93460800	Enhancers	Stomach Mucosa	stomach
2	chr15:93450600-93459600	Genic enhancers	Fetal Thymus	thymus
3	chr15:93451800-93464000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:93452000-93461000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:93454000-93460600	Weak transcription	Ovary	ovary
6	chr15:93454000-93464000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:93454200-93459800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr15:93454200-93460600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:93454200-93460600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:93454200-93460800	Enhancers	Adipose Nuclei	Adipose
11	chr15:93454600-93460600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr15:93454800-93460000	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr15:93455000-93459800	Weak transcription	Aorta	Aorta
14	chr15:93455400-93460600	Weak transcription	Fetal Lung	lung
15	chr15:93455600-93464400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:93455600-93464800	Weak transcription	Fetal Brain Female	brain
17	chr15:93456200-93460600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:93456400-93459800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr15:93456600-93461600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:93457000-93460200	Weak transcription	Lung	lung
21	chr15:93457000-93489800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:93457200-93459800	Weak transcription	Fetal Stomach	stomach
23	chr15:93457200-93464000	Weak transcription	Gastric	stomach
24	chr15:93457400-93459600	Genic enhancers	HSMM	muscle
25	chr15:93457400-93459800	Flanking Active TSS	Primary T cells from cord blood	blood
26	chr15:93457800-93459600	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr15:93457800-93461000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr15:93457800-93464200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:93458200-93459600	Enhancers	Left Ventricle	heart
30	chr15:93458200-93459800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:93458200-93460600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:93458200-93460600	Genic enhancers	NHEK	skin
33	chr15:93458200-93460800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr15:93458200-93460800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:93458200-93460800	Weak transcription	Fetal Brain Male	brain
36	chr15:93458200-93461200	Enhancers	Psoas Muscle	Psoas
37	chr15:93458200-93461800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr15:93458200-93463600	Weak transcription	Small Intestine	intestine
39	chr15:93458400-93459800	Enhancers	Brain Hippocampus Middle	brain
40	chr15:93458400-93460000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr15:93458400-93460600	Weak transcription	NHLF	lung
42	chr15:93458400-93460800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr15:93458400-93460800	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr15:93458400-93460800	Enhancers	Liver	Liver
45	chr15:93458400-93460800	Weak transcription	Brain Anterior Caudate	brain
46	chr15:93458400-93460800	Enhancers	Colon Smooth Muscle	Colon
47	chr15:93458400-93460800	Weak transcription	Fetal Heart	heart
48	chr15:93458400-93462200	Weak transcription	Colonic Mucosa	Colon
49	chr15:93458400-93463600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr15:93458600-93460600	Weak transcription	HMEC	breast

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