Variant report

Variant rs1408955
Chromosome Location chr1:78384518-78384519
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:78355800-78386200 Weak transcription Fetal Intestine Small intestine
2 chr1:78356200-78408600 Weak transcription HMEC breast
3 chr1:78356400-78396000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:78367000-78407000 Weak transcription Fetal Adrenal Gland Adrenal Gland
5 chr1:78371600-78413000 Weak transcription Psoas Muscle Psoas
6 chr1:78372800-78418600 Weak transcription Pancreas Pancrea
7 chr1:78381400-78387000 Strong transcription NH-A brain
8 chr1:78381400-78388000 Strong transcription HSMM muscle
9 chr1:78381400-78390600 Strong transcription Osteobl bone
10 chr1:78381600-78395200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr1:78381800-78387600 Strong transcription Skeletal Muscle Female skeletal muscle
12 chr1:78381800-78390600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr1:78381800-78390800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr1:78382000-78386600 Strong transcription Muscle Satellite Cultured Cells --
15 chr1:78382200-78390800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr1:78382200-78407400 Weak transcription iPS-20b Cell Line embryonic stem cell
17 chr1:78382200-78408000 Weak transcription HUES64 Cell Line embryonic stem cell
18 chr1:78382400-78387800 Strong transcription Left Ventricle heart
19 chr1:78382400-78388000 Strong transcription HSMMtube muscle
20 chr1:78382400-78394000 Strong transcription Skeletal Muscle Male skeletal muscle
21 chr1:78382400-78405600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr1:78382600-78384600 Strong transcription NHLF lung
23 chr1:78382800-78395800 Weak transcription NHDF-Ad bronchial
24 chr1:78383000-78400000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr1:78383200-78386200 Strong transcription Fetal Muscle Leg muscle
26 chr1:78383200-78389800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr1:78383400-78385800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
28 chr1:78383600-78384600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr1:78383600-78384600 Strong transcription Colon Smooth Muscle Colon
30 chr1:78383600-78385200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr1:78383600-78385800 Strong transcription Duodenum Smooth Muscle Duodenum
32 chr1:78383600-78391000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr1:78383600-78418600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr1:78383800-78384600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr1:78383800-78384600 Strong transcription HUVEC blood vessel
36 chr1:78383800-78385000 Strong transcription Rectal Smooth Muscle rectum
37 chr1:78383800-78385200 Strong transcription Fetal Intestine Large intestine
38 chr1:78383800-78385200 Strong transcription Fetal Lung lung
39 chr1:78383800-78387800 Strong transcription Fetal Muscle Trunk muscle
40 chr1:78383800-78389600 Strong transcription Stomach Smooth Muscle stomach
41 chr1:78383800-78404000 Strong transcription Breast Myoepithelial Primary Cells Breast
42 chr1:78384000-78384600 Strong transcription Ovary ovary
43 chr1:78384000-78385400 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr1:78384000-78386200 Strong transcription Fetal Stomach stomach
45 chr1:78384000-78388200 Strong transcription Aorta Aorta
46 chr1:78384000-78395400 Weak transcription Fetal Heart heart
47 chr1:78384200-78384600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
48 chr1:78384200-78385400 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
49 chr1:78384200-78392200 Weak transcription Adipose Nuclei Adipose
50 chr1:78384400-78387600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin

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