Variant report

Variant	rs141118976
Chromosome Location	chr6:149865789-149865790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:149858502..149860494-chr6:149865372..149866981,2	MCF-7	breast:
2	chr6:149638315..149640262-chr6:149865472..149868393,2	K562	blood:
3	chr6:149865631..149868201-chr6:150184694..150186592,2	MCF-7	breast:
4	chr6:149864573..149867229-chr6:150066856..150070071,3	K562	blood:
5	chr6:149863614..149866317-chr6:150041414..150044208,2	K562	blood:
6	chr6:149865611..149871097-chr6:149883709..149888968,8	K562	blood:
7	chr6:149865491..149867139-chr6:149970977..149973867,2	K562	blood:
8	chr6:149863889..149870301-chr6:149880315..149888361,14	K562	blood:
9	chr6:149864361..149868960-chr6:149967728..149970352,9	K562	blood:
10	chr6:149865589..149867401-chr6:150242514..150245357,2	MCF-7	breast:
11	chr6:149863419..149867530-chr6:149880344..149883161,3	K562	blood:
12	chr6:149865412..149868638-chr6:150066732..150070347,4	K562	blood:
13	chr6:149865149..149869984-chr6:149967517..149970273,6	K562	blood:
14	chr6:149864025..149866491-chr6:150038497..150040918,2	K562	blood:
15	chr6:149865083..149869048-chr6:149884009..149889859,10	MCF-7	breast:
16	chr6:149864465..149868641-chr6:150037478..150040253,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000235168	Chromatin interaction
ENSG00000055208	Chromatin interaction
ENSG00000120253	Chromatin interaction
ENSG00000203722	Chromatin interaction
ENSG00000055211	Chromatin interaction
ENSG00000120256	Chromatin interaction
ENSG00000186625	Chromatin interaction
ENSG00000131023	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966665	chr6:149862756-149895103	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149832000-149865800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:149837400-149866000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:149852400-149865800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:149861000-149865800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:149861200-149865800	Weak transcription	Aorta	Aorta
6	chr6:149861200-149865800	Weak transcription	Esophagus	oesophagus
7	chr6:149861800-149865800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:149861800-149865800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:149861800-149865800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:149861800-149865800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:149861800-149865800	Weak transcription	Lung	lung
12	chr6:149861800-149865800	Weak transcription	Pancreas	Pancrea
13	chr6:149862200-149865800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:149862200-149865800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:149862200-149865800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:149862200-149865800	Weak transcription	Left Ventricle	heart
17	chr6:149862600-149865800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:149862800-149865800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:149863400-149865800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr6:149863600-149865800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr6:149863800-149865800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr6:149863800-149865800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr6:149863800-149865800	Enhancers	Liver	Liver
24	chr6:149864800-149865800	Genic enhancers	Primary B cells from cord blood	blood
25	chr6:149864800-149865800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr6:149865000-149865800	Enhancers	Adipose Nuclei	Adipose
27	chr6:149865000-149865800	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr6:149865000-149865800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr6:149865000-149866000	Flanking Active TSS	K562	blood
30	chr6:149865000-149866200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:149865000-149866200	Flanking Active TSS	NHEK	skin
32	chr6:149865000-149866400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:149865200-149865800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:149865200-149865800	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr6:149865200-149865800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:149865200-149865800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:149865200-149865800	Enhancers	Primary T cells fromperipheralblood	blood
38	chr6:149865200-149865800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:149865200-149865800	Enhancers	Brain Angular Gyrus	brain
40	chr6:149865200-149865800	Enhancers	Fetal Muscle Leg	muscle
41	chr6:149865200-149865800	Enhancers	Placenta	Placenta
42	chr6:149865200-149865800	Enhancers	Fetal Thymus	thymus
43	chr6:149865200-149865800	Enhancers	Psoas Muscle	Psoas
44	chr6:149865200-149865800	Enhancers	Right Atrium	heart
45	chr6:149865200-149865800	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr6:149865200-149865800	Enhancers	Small Intestine	intestine
47	chr6:149865200-149865800	Enhancers	Stomach Mucosa	stomach
48	chr6:149865200-149865800	Enhancers	Hela-S3	cervix
49	chr6:149865200-149865800	Flanking Active TSS	HepG2	liver
50	chr6:149865200-149866000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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