Variant report

Variant	rs1411462
Chromosome Location	chr9:101943155-101943156
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RELA	chr9:101942511-101944711	GM18505	blood:	n/a	n/a
2	MTA3	chr9:101942389-101943181	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101937724..101939532-chr9:101941994..101944179,2	K562	blood:
2	chr9:101943057..101944603-chr9:101945420..101948362,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227269	TF binding region
ENSG00000240235	Chromatin interaction
ENSG00000227269	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10121020	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10988735	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10988737	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10988738	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12340952	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12685854	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101931600-101947000	Weak transcription	Right Atrium	heart
2	chr9:101935200-101947200	Weak transcription	Gastric	stomach
3	chr9:101936400-101943800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:101936600-101949600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:101939200-101946400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:101939400-101943600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:101939400-101945400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:101941000-101943400	Enhancers	Fetal Muscle Leg	muscle
9	chr9:101941800-101943600	Weak transcription	Primary B cells from cord blood	blood
10	chr9:101941800-101946800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr9:101942000-101943800	Enhancers	Fetal Intestine Large	intestine
12	chr9:101942200-101946800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:101942600-101944600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr9:101942800-101943400	Enhancers	Fetal Intestine Small	intestine
15	chr9:101942800-101943400	Enhancers	Fetal Muscle Trunk	muscle
16	chr9:101942800-101944000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:101942800-101944600	Flanking Active TSS	GM12878-XiMat	blood
18	chr9:101942800-101945000	Enhancers	Primary B cells from peripheral blood	blood
19	chr9:101942800-101945200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:101943000-101943200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:101943000-101943200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:101943000-101943200	Enhancers	Fetal Stomach	stomach
23	chr9:101943000-101943200	Flanking Active TSS	HepG2	liver
24	chr9:101943000-101943400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:101943000-101943800	Enhancers	Fetal Lung	lung
26	chr9:101943000-101944400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr9:101943000-101944400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:101943000-101944400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr9:101943000-101944400	Enhancers	Fetal Thymus	thymus

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