Variant report

Variant	rs10121020
Chromosome Location	chr9:101946041-101946042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101945788..101948395-chr9:101983472..101985266,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106803	Chromatin interaction
ENSG00000119523	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10114715	0.96[YRI][hapmap]
rs10819641	0.92[ASW][hapmap];0.91[YRI][hapmap]
rs10988735	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10988737	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10988738	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10988742	0.92[ASW][hapmap];0.91[MKK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs10988743	0.80[YRI][hapmap]
rs10988746	0.85[ASW][hapmap]
rs12336513	0.92[ASW][hapmap];0.96[YRI][hapmap]
rs12336759	0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs12336790	0.87[YRI][hapmap]
rs12340839	0.87[YRI][hapmap]
rs12340952	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12345762	0.91[YRI][hapmap]
rs12685854	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13440104	0.87[YRI][hapmap]
rs1411462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16905728	0.91[YRI][hapmap]
rs2221383	0.92[ASW][hapmap];0.86[MKK][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs60965273	0.80[AFR][1000 genomes]
rs6478976	0.92[ASW][hapmap];0.87[YRI][hapmap]
rs7035537	0.80[YRI][hapmap]
rs73653744	0.85[AFR][1000 genomes]
rs912248	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101931600-101947000	Weak transcription	Right Atrium	heart
2	chr9:101935200-101947200	Weak transcription	Gastric	stomach
3	chr9:101936600-101949600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:101939200-101946400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:101941800-101946800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:101942200-101946800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:101943400-101946400	Weak transcription	Fetal Stomach	stomach
8	chr9:101943800-101946400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:101943800-101946800	Weak transcription	Fetal Intestine Large	intestine
10	chr9:101944200-101946800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr9:101944200-101947200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:101944400-101946400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr9:101944400-101946400	Weak transcription	NH-A	brain
14	chr9:101944400-101946800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:101944400-101946800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr9:101944400-101946800	Weak transcription	Thymus	Thymus
17	chr9:101944600-101946400	Weak transcription	Colonic Mucosa	Colon
18	chr9:101944600-101946800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr9:101944600-101949000	Enhancers	GM12878-XiMat	blood
20	chr9:101944800-101946200	Weak transcription	HSMM	muscle
21	chr9:101944800-101946400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:101944800-101946400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:101945000-101946400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr9:101945000-101946800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:101945000-101946800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:101945000-101946800	Weak transcription	Primary B cells from cord blood	blood
27	chr9:101945000-101946800	Weak transcription	Osteobl	bone
28	chr9:101945400-101946400	Weak transcription	Fetal Lung	lung
29	chr9:101945400-101947000	Enhancers	Primary hematopoietic stem cells	blood
30	chr9:101945600-101946200	Enhancers	Primary T cells from cord blood	blood
31	chr9:101945600-101946800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr9:101945600-101946800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:101945600-101946800	Enhancers	Stomach Smooth Muscle	stomach
34	chr9:101945600-101947000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr9:101945800-101946600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr9:101945800-101947000	Enhancers	Fetal Muscle Leg	muscle
37	chr9:101945800-101947400	Enhancers	Fetal Thymus	thymus
38	chr9:101945800-101947800	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr9:101946000-101946400	Weak transcription	Fetal Intestine Small	intestine
40	chr9:101946000-101947000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:101946000-101947000	Enhancers	Fetal Muscle Trunk	muscle
42	chr9:101946000-101947000	Enhancers	HUVEC	blood vessel

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