Variant report

Variant	rs10988743
Chromosome Location	chr9:101952766-101952767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101952719..101954547-chr9:101983218..101985941,2	MCF-7	breast:
2	chr9:101946277..101948518-chr9:101952017..101953928,2	MCF-7	breast:
3	chr9:101952435..101959187-chr9:101982290..101985737,9	MCF-7	breast:
4	chr9:101952547..101955181-chr9:101957455..101959759,2	K562	blood:
5	chr9:101945649..101948475-chr9:101952304..101955488,3	K562	blood:
6	chr9:101952481..101954047-chr9:101956744..101958955,2	K562	blood:

Variant related genes	Relation type
ENSG00000106803	Chromatin interaction
ENSG00000227269	Chromatin interaction
ENSG00000240235	Chromatin interaction
ENSG00000119523	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10114715	0.82[CEU][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10121020	0.80[YRI][hapmap]
rs10819641	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10988738	0.91[YRI][hapmap]
rs10988740	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10988742	0.90[YRI][hapmap]
rs10988744	0.82[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988745	0.82[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10988746	0.82[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10988749	0.82[CEU][hapmap]
rs12336513	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12336759	0.90[YRI][hapmap]
rs12336790	0.82[CEU][hapmap];0.89[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12339244	0.89[AFR][1000 genomes]
rs12340839	0.82[CEU][hapmap];0.95[YRI][hapmap];0.85[EUR][1000 genomes]
rs12340952	1.00[YRI][hapmap]
rs12345762	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13440104	0.82[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16905728	0.91[YRI][hapmap]
rs16918352	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2221383	0.90[YRI][hapmap]
rs59091994	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478976	0.82[CEU][hapmap];0.95[YRI][hapmap];0.85[EUR][1000 genomes]
rs73653744	0.84[AFR][1000 genomes]
rs7872043	0.82[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs912248	0.82[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs912249	0.82[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101947600-101952800	Weak transcription	Spleen	Spleen
2	chr9:101951000-101953400	Enhancers	Fetal Stomach	stomach
3	chr9:101951200-101953000	Bivalent Enhancer	NHDF-Ad	bronchial
4	chr9:101951600-101953000	Enhancers	Fetal Muscle Leg	muscle
5	chr9:101952000-101952800	Enhancers	HSMMtube	muscle
6	chr9:101952000-101953000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:101952200-101952800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:101952400-101952800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:101952400-101952800	Enhancers	Lung	lung
10	chr9:101952600-101953000	Bivalent Enhancer	NHLF	lung

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