Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:101963160..101964687-chr9:101972370..101974141,2	K562	blood:
2	chr9:101962185..101964687-chr9:101972370..101974246,3	K562	blood:
3	chr9:101959542..101961588-chr9:101963209..101965613,2	K562	blood:
4	chr9:101962412..101966717-chr9:101982688..101986009,4	MCF-7	breast:
5	chr9:101959402..101964321-chr9:101981807..101986192,6	MCF-7	breast:
6	chr9:101961591..101964796-chr9:101979451..101984055,5	K562	blood:

Variant related genes	Relation type
ENSG00000119523	Chromatin interaction
ENSG00000106803	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10114715	1.00[CEU][hapmap]
rs10819641	1.00[CEU][hapmap]
rs10988740	1.00[CEU][hapmap]
rs10988743	0.82[CEU][hapmap]
rs10988744	1.00[CEU][hapmap]
rs10988745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs10988746	1.00[CEU][hapmap];0.90[TSI][hapmap]
rs12002203	0.85[GIH][hapmap]
rs12003123	0.93[EUR][1000 genomes]
rs12336513	1.00[CEU][hapmap]
rs12336790	1.00[CEU][hapmap]
rs12340839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12345762	1.00[CEU][hapmap]
rs13440104	1.00[CEU][hapmap]
rs16918352	1.00[CEU][hapmap]
rs17725644	0.85[GIH][hapmap]
rs6478976	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7857426	0.98[EUR][1000 genomes]
rs7863354	0.85[GIH][hapmap]
rs7872043	1.00[CEU][hapmap]
rs912248	1.00[CEU][hapmap]
rs912249	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101963800-101964200	Flanking Active TSS	Brain Germinal Matrix	brain
2	chr9:101963800-101964200	Enhancers	Brain Hippocampus Middle	brain
3	chr9:101963800-101964600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:101964000-101964400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:101964000-101982000	Weak transcription	Brain Substantia Nigra	brain

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