Variant report

Variant	rs912249
Chromosome Location	chr9:101960789-101960790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10114715	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10819641	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10988740	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10988743	0.82[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10988744	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10988745	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10988746	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10988749	1.00[CEU][hapmap]
rs12336513	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12336790	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12340839	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12345762	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13440104	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16918352	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs59091994	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6478976	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7872043	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs912248	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101958800-101962000	Enhancers	GM12878-XiMat	blood
2	chr9:101960000-101960800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:101960000-101960800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr9:101960400-101960800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr9:101960600-101960800	Enhancers	Brain Germinal Matrix	brain
6	chr9:101960600-101964000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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