Variant report

Variant	rs10988745
Chromosome Location	chr9:101953170-101953171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101952719..101954547-chr9:101983218..101985941,2	MCF-7	breast:
2	chr9:101946277..101948518-chr9:101952017..101953928,2	MCF-7	breast:
3	chr9:101952435..101959187-chr9:101982290..101985737,9	MCF-7	breast:
4	chr9:101952547..101955181-chr9:101957455..101959759,2	K562	blood:
5	chr9:101945649..101948475-chr9:101952304..101955488,3	K562	blood:
6	chr9:101952481..101954047-chr9:101956744..101958955,2	K562	blood:

Variant related genes	Relation type
ENSG00000106803	Chromatin interaction
ENSG00000227269	Chromatin interaction
ENSG00000240235	Chromatin interaction
ENSG00000119523	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10114715	1.00[CEU][hapmap];0.80[YRI][hapmap];0.83[EUR][1000 genomes]
rs10819641	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs10988738	0.88[YRI][hapmap]
rs10988740	1.00[CEU][hapmap]
rs10988742	0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs10988743	0.82[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10988744	1.00[CEU][hapmap];0.92[YRI][hapmap];0.85[EUR][1000 genomes]
rs10988746	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10988749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs12003123	0.84[EUR][1000 genomes]
rs12336513	1.00[CEU][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes]
rs12336759	0.88[YRI][hapmap]
rs12336790	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs12339244	0.91[AFR][1000 genomes]
rs12340839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12340952	1.00[YRI][hapmap]
rs12345762	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs13440104	1.00[CEU][hapmap];0.92[YRI][hapmap];0.85[EUR][1000 genomes]
rs16905728	0.88[YRI][hapmap]
rs16918352	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs2221383	0.87[YRI][hapmap]
rs59091994	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6478976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73653744	0.86[AFR][1000 genomes]
rs7857426	0.88[EUR][1000 genomes]
rs7872043	1.00[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs912248	1.00[CEU][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes]
rs912249	1.00[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101951000-101953400	Enhancers	Fetal Stomach	stomach
2	chr9:101953000-101953200	Enhancers	Spleen	Spleen

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