Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:101953256..101955398-chr9:101958583..101960819,2	MCF-7	breast:
2	chr9:101952547..101955181-chr9:101957455..101959759,2	K562	blood:
3	chr9:101952435..101959187-chr9:101982290..101985737,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106803	Chromatin interaction
ENSG00000119523	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10114715	0.87[YRI][hapmap]
rs10121020	0.92[ASW][hapmap];0.86[MKK][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs10819641	0.85[ASW][hapmap];1.00[YRI][hapmap]
rs10988738	1.00[YRI][hapmap]
rs10988742	1.00[ASW][hapmap];0.96[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10988743	0.90[YRI][hapmap]
rs10988744	0.83[YRI][hapmap]
rs10988745	0.87[YRI][hapmap]
rs12336513	0.85[ASW][hapmap];0.87[YRI][hapmap]
rs12336759	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12340839	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs12340952	0.87[YRI][hapmap]
rs12345762	1.00[YRI][hapmap]
rs13440104	0.95[YRI][hapmap]
rs16905728	1.00[YRI][hapmap]
rs16918352	0.83[YRI][hapmap]
rs16918354	0.86[YRI][hapmap]
rs6478976	1.00[ASW][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs7025181	0.82[YRI][hapmap]
rs7035537	0.85[YRI][hapmap]
rs73653744	0.86[AFR][1000 genomes]
rs7872043	0.83[YRI][hapmap]
rs912248	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101958800-101962000	Enhancers	GM12878-XiMat	blood

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