Variant report

Variant	rs7025181
Chromosome Location	chr9:101944435-101944436
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:38)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:38 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr9:101943834-101944535	GM12878	blood:	n/a	n/a
2	POLR2A	chr9:101943633-101944497	GM12878	blood:	n/a	n/a
3	POLR2A	chr9:101943746-101944474	GM12892	blood:	n/a	n/a
4	TBL1XR1	chr9:101943578-101944567	GM12878	blood:	n/a	n/a
5	TBP	chr9:101943746-101944444	GM12878	blood:	n/a	n/a
6	POLR2A	chr9:101943405-101944472	GM12878	blood:	n/a	n/a
7	ATF2	chr9:101943786-101944473	GM12878	blood:	n/a	n/a
8	STAT5A	chr9:101943867-101944459	GM12878	blood:	n/a	n/a
9	NFATC1	chr9:101943691-101944549	GM12878	blood:	n/a	n/a
10	MTA3	chr9:101943470-101944463	GM12878	blood:	n/a	n/a
11	RELA	chr9:101942511-101944711	GM18505	blood:	n/a	n/a
12	CHD1	chr9:101943813-101944630	GM12878	blood:	n/a	n/a
13	STAT5A	chr9:101943758-101944439	GM12878	blood:	n/a	n/a
14	POLR2A	chr9:101943437-101944503	GM12891	blood:	n/a	n/a
15	NFIC	chr9:101943579-101944455	GM12878	blood:	n/a	n/a
16	RUNX3	chr9:101943474-101944775	GM12878	blood:	n/a	n/a
17	RELA	chr9:101943700-101944474	GM19099	blood:	n/a	n/a
18	RELA	chr9:101943546-101944534	GM19193	blood:	n/a	n/a
19	NFATC1	chr9:101943799-101944508	GM12878	blood:	n/a	n/a
20	NFIC	chr9:101943647-101944550	GM12878	blood:	n/a	n/a
21	RELA	chr9:101943629-101944737	GM12878	blood:	n/a	n/a
22	POLR2A	chr9:101943758-101944481	GM12891	blood:	n/a	n/a
23	MAZ	chr9:101943903-101944549	GM12878	blood:	n/a	n/a
24	RELA	chr9:101943400-101944645	GM12891	blood:	n/a	n/a
25	EP300	chr9:101943814-101944457	GM12878	blood:	n/a	n/a
26	RELA	chr9:101943542-101944616	GM10847	blood:	n/a	n/a
27	POLR2A	chr9:101943447-101944507	GM12892	blood:	n/a	n/a
28	FOXM1	chr9:101943627-101944488	GM12878	blood:	n/a	n/a
29	FOXM1	chr9:101943695-101944486	GM12878	blood:	n/a	n/a
30	EBF1	chr9:101943843-101944776	GM12878	blood:	n/a	n/a
31	PML	chr9:101943667-101944474	GM12878	blood:	n/a	n/a
32	EP300	chr9:101943814-101944462	GM12878	blood:	n/a	n/a
33	MTA3	chr9:101943402-101944464	GM12878	blood:	n/a	n/a
34	RELA	chr9:101943838-101944563	GM18951	blood:	n/a	n/a
35	IKZF1	chr9:101943925-101944888	GM12878	blood:	n/a	n/a
36	RELA	chr9:101943543-101944443	GM15510	blood:	n/a	n/a
37	STAT3	chr9:101943788-101944717	GM12878	blood:	n/a	n/a
38	CEBPB	chr9:101943690-101944454	GM12878	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101943057..101944603-chr9:101945420..101948362,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000227269	TF binding region
ENSG00000227269	Chromatin interaction
ENSG00000240235	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10819641	0.82[YRI][hapmap]
rs10988738	0.83[YRI][hapmap]
rs10988742	0.82[YRI][hapmap]
rs12336759	0.82[YRI][hapmap]
rs12345143	0.89[AMR][1000 genomes]
rs16905728	0.83[YRI][hapmap]
rs16918354	0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2221383	0.82[YRI][hapmap]
rs56112438	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60965273	0.89[AMR][1000 genomes]
rs7024066	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653741	0.89[AMR][1000 genomes]
rs73653744	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101931600-101947000	Weak transcription	Right Atrium	heart
2	chr9:101935200-101947200	Weak transcription	Gastric	stomach
3	chr9:101936600-101949600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:101939200-101946400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:101939400-101945400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:101941800-101946800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:101942200-101946800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:101942600-101944600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr9:101942800-101944600	Flanking Active TSS	GM12878-XiMat	blood
10	chr9:101942800-101945000	Enhancers	Primary B cells from peripheral blood	blood
11	chr9:101942800-101945200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:101943200-101945000	Enhancers	Primary hematopoietic stem cells	blood
13	chr9:101943400-101944800	Enhancers	HSMM	muscle
14	chr9:101943400-101945800	Weak transcription	Fetal Intestine Small	intestine
15	chr9:101943400-101945800	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:101943400-101946000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr9:101943400-101946400	Weak transcription	Fetal Stomach	stomach
18	chr9:101943600-101944800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:101943600-101945000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:101943600-101945000	Enhancers	Primary B cells from cord blood	blood
21	chr9:101943800-101944800	Weak transcription	Fetal Lung	lung
22	chr9:101943800-101945000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:101943800-101946400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr9:101943800-101946800	Weak transcription	Fetal Intestine Large	intestine
25	chr9:101944000-101944600	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr9:101944200-101945000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:101944200-101945000	Enhancers	Osteobl	bone
28	chr9:101944200-101946800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr9:101944200-101947200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:101944400-101944800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:101944400-101945200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:101944400-101945400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:101944400-101945800	Weak transcription	Fetal Thymus	thymus
34	chr9:101944400-101946400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr9:101944400-101946400	Weak transcription	NH-A	brain
36	chr9:101944400-101946800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr9:101944400-101946800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr9:101944400-101946800	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links