Variant report

Variant	rs12345143
Chromosome Location	chr9:101940616-101940617
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10988738	0.94[AFR][1000 genomes]
rs10988742	0.83[AFR][1000 genomes]
rs12336759	0.83[AFR][1000 genomes]
rs12342980	0.83[AFR][1000 genomes]
rs16905728	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16918354	0.89[AMR][1000 genomes]
rs56112438	0.89[AMR][1000 genomes]
rs57839076	0.81[AMR][1000 genomes]
rs60965273	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7024066	0.89[AMR][1000 genomes]
rs7025181	0.89[AMR][1000 genomes]
rs7035537	0.81[AMR][1000 genomes]
rs73653741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653744	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101931600-101947000	Weak transcription	Right Atrium	heart
2	chr9:101935200-101941000	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:101935200-101947200	Weak transcription	Gastric	stomach
4	chr9:101936400-101941400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr9:101936400-101943800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:101936600-101949600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:101939000-101941000	Weak transcription	GM12878-XiMat	blood
8	chr9:101939200-101946400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:101939400-101943600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:101939400-101945400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:101939800-101942600	Weak transcription	HepG2	liver
12	chr9:101940000-101941800	Enhancers	Primary B cells from cord blood	blood
13	chr9:101940200-101940800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:101940200-101941800	Enhancers	Primary B cells from peripheral blood	blood
15	chr9:101940200-101942000	Weak transcription	Fetal Intestine Large	intestine
16	chr9:101940200-101942800	Weak transcription	Fetal Intestine Small	intestine
17	chr9:101940200-101943000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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