Variant report

Variant	rs73653744
Chromosome Location	chr9:101947398-101947399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101736911..101737434-chr9:101946524..101947493,2	K562	blood:
2	chr9:101945788..101948395-chr9:101983472..101985266,3	MCF-7	breast:
3	chr9:101622672..101623296-chr9:101946632..101947533,2	MCF-7	breast:
4	chr9:101925187..101925688-chr9:101946645..101947484,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119523	Chromatin interaction
ENSG00000106803	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10121020	0.85[AFR][1000 genomes]
rs10988738	0.84[AFR][1000 genomes]
rs10988742	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10988743	0.84[AFR][1000 genomes]
rs10988745	0.86[AFR][1000 genomes]
rs12336759	0.88[AFR][1000 genomes]
rs12339244	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12345143	0.81[AFR][1000 genomes]
rs16905728	0.81[AFR][1000 genomes]
rs16918354	0.87[AMR][1000 genomes]
rs2221383	0.86[AFR][1000 genomes]
rs56112438	0.87[AMR][1000 genomes]
rs59234868	0.85[AMR][1000 genomes]
rs60965273	0.84[AFR][1000 genomes]
rs7024066	0.87[AMR][1000 genomes]
rs7025181	0.87[AMR][1000 genomes]
rs73653741	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101936600-101949600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:101944600-101949000	Enhancers	GM12878-XiMat	blood
3	chr9:101945800-101947400	Enhancers	Fetal Thymus	thymus
4	chr9:101945800-101947800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr9:101946200-101949200	Weak transcription	Primary T cells from cord blood	blood
6	chr9:101946400-101947400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr9:101946400-101947400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr9:101946400-101947600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:101946400-101947600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr9:101946400-101947600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:101946400-101947600	Enhancers	Fetal Brain Male	brain
12	chr9:101946400-101947800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr9:101946400-101947800	Enhancers	Fetal Stomach	stomach
14	chr9:101946400-101951200	Enhancers	Primary B cells from peripheral blood	blood
15	chr9:101946600-101947600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:101946800-101947400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr9:101946800-101947400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr9:101946800-101947400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr9:101946800-101947400	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr9:101946800-101947400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:101946800-101947400	Enhancers	Fetal Intestine Large	intestine
22	chr9:101946800-101947400	Bivalent Enhancer	Placenta	Placenta
23	chr9:101946800-101947400	Enhancers	Dnd41	blood
24	chr9:101946800-101947600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:101946800-101947600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:101946800-101947600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr9:101946800-101947600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr9:101946800-101947600	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr9:101946800-101947600	Enhancers	Primary B cells from cord blood	blood
30	chr9:101946800-101947600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr9:101946800-101947600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr9:101946800-101947600	Active TSS	Brain Cingulate Gyrus	brain
33	chr9:101946800-101947600	Enhancers	Pancreas	Pancrea
34	chr9:101946800-101947600	Enhancers	Placenta Amnion	Placenta Amnion
35	chr9:101946800-101947600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr9:101946800-101947600	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr9:101946800-101947800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr9:101946800-101947800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:101947000-101947400	Flanking Active TSS	Primary hematopoietic stem cells	blood
40	chr9:101947000-101947400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr9:101947000-101947400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr9:101947000-101947400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr9:101947000-101947400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr9:101947000-101947400	Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr9:101947000-101947400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr9:101947000-101947400	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr9:101947000-101947400	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr9:101947000-101947400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr9:101947000-101947400	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr9:101947000-101947400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland

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