Variant report

Variant	rs59234868
Chromosome Location	chr9:101898168-101898169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101865388..101869128-chr9:101895199..101898267,5	MCF-7	breast:
2	chr9:101864389..101869659-chr9:101898096..101900514,5	MCF-7	breast:
3	chr9:87332836..87333364-chr9:101898075..101898575,2	MCF-7	breast:
4	chr9:101875664..101877877-chr9:101897071..101898718,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61627438	0.83[AMR][1000 genomes]
rs73653744	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1792736	chr9:101891126-101909372	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101870000-101908600	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101876600-101904200	Weak transcription	Liver	Liver
3	chr9:101878800-101903200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:101882200-101901400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr9:101882200-101903000	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:101883000-101900000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:101885200-101901600	Weak transcription	A549	lung
8	chr9:101888200-101907000	Weak transcription	HepG2	liver
9	chr9:101889400-101904000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:101889600-101901000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:101889800-101904400	Weak transcription	Lung	lung
12	chr9:101890000-101900800	Weak transcription	Fetal Intestine Small	intestine
13	chr9:101890000-101914200	Weak transcription	Pancreas	Pancrea
14	chr9:101890200-101904800	Weak transcription	Fetal Intestine Large	intestine
15	chr9:101890200-101907600	Weak transcription	Gastric	stomach
16	chr9:101890400-101908400	Weak transcription	Hela-S3	cervix
17	chr9:101890600-101900200	Weak transcription	Ovary	ovary
18	chr9:101890600-101900800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr9:101890600-101901600	Weak transcription	Fetal Lung	lung
20	chr9:101890600-101907000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr9:101890600-101908800	Weak transcription	Right Ventricle	heart
22	chr9:101890800-101903600	Weak transcription	Right Atrium	heart
23	chr9:101891000-101900200	Weak transcription	Placenta	Placenta
24	chr9:101891400-101903600	Weak transcription	Dnd41	blood
25	chr9:101891600-101900800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr9:101892400-101902600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:101892600-101902800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:101892600-101914200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:101892800-101899200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr9:101892800-101900200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr9:101892800-101900200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr9:101892800-101901000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:101892800-101905800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr9:101892800-101921000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr9:101893000-101902800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr9:101893000-101904200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr9:101893200-101901400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr9:101893800-101902600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr9:101894200-101906800	Weak transcription	Fetal Kidney	kidney
40	chr9:101894200-101907600	Weak transcription	HUVEC	blood vessel
41	chr9:101894800-101900800	Weak transcription	Left Ventricle	heart
42	chr9:101895000-101899200	Enhancers	GM12878-XiMat	blood
43	chr9:101895000-101900200	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr9:101895000-101900800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr9:101895000-101900800	Weak transcription	Fetal Stomach	stomach
46	chr9:101895000-101907200	Weak transcription	Spleen	Spleen
47	chr9:101895000-101914200	Weak transcription	Esophagus	oesophagus
48	chr9:101895200-101900000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr9:101895200-101903800	Weak transcription	Fetal Muscle Trunk	muscle
50	chr9:101895400-101899400	Weak transcription	Duodenum Mucosa	Duodenum

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