Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101949727..101951901-chr9:101983265..101985002,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119523	Chromatin interaction
ENSG00000106803	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10114715	0.87[YRI][hapmap]
rs10121020	0.92[ASW][hapmap];0.91[MKK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs10819641	0.85[ASW][hapmap];1.00[YRI][hapmap]
rs10988738	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10988743	0.90[YRI][hapmap]
rs10988744	0.83[YRI][hapmap]
rs10988745	0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs12336513	0.85[ASW][hapmap];0.87[YRI][hapmap]
rs12336759	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12339244	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340839	0.95[YRI][hapmap]
rs12340952	0.87[YRI][hapmap]
rs12345143	0.83[AFR][1000 genomes]
rs12345762	1.00[YRI][hapmap]
rs13440104	0.95[YRI][hapmap]
rs16905728	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs16918352	0.83[YRI][hapmap]
rs16918354	0.86[YRI][hapmap]
rs2221383	1.00[ASW][hapmap];0.96[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs56112438	0.81[AFR][1000 genomes]
rs60965273	0.86[AFR][1000 genomes]
rs6478976	1.00[ASW][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap]
rs7025181	0.82[YRI][hapmap]
rs7035537	0.85[YRI][hapmap]
rs73653741	0.83[AFR][1000 genomes]
rs73653744	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7872043	0.83[YRI][hapmap]
rs912248	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101946400-101951200	Enhancers	Primary B cells from peripheral blood	blood
2	chr9:101947600-101952400	Weak transcription	Lung	lung
3	chr9:101947600-101952400	Weak transcription	Right Atrium	heart
4	chr9:101947600-101952800	Weak transcription	Spleen	Spleen
5	chr9:101947800-101952000	Weak transcription	HSMMtube	muscle
6	chr9:101948800-101951200	Enhancers	Primary B cells from cord blood	blood
7	chr9:101951000-101953400	Enhancers	Fetal Stomach	stomach

Quick Search: