Variant report
| Variant | rs12340952 |
|---|---|
| Chromosome Location | chr9:101957366-101957367 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000119523 | Chromatin interaction |
| ENSG00000106803 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10114715 | 0.80[YRI][hapmap] |
| rs10121020 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10819641 | 0.87[YRI][hapmap] |
| rs10988735 | 0.82[ASN][1000 genomes] |
| rs10988737 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs10988738 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.85[ASN][1000 genomes] |
| rs10988742 | 0.87[YRI][hapmap] |
| rs10988743 | 1.00[YRI][hapmap] |
| rs10988744 | 0.92[YRI][hapmap] |
| rs10988745 | 1.00[YRI][hapmap] |
| rs12336513 | 0.83[YRI][hapmap] |
| rs12336759 | 0.88[YRI][hapmap] |
| rs12336790 | 0.80[YRI][hapmap] |
| rs12340839 | 0.92[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs12345762 | 0.84[YRI][hapmap] |
| rs12685854 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs13440104 | 0.92[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs1411462 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs16905728 | 0.88[YRI][hapmap] |
| rs16918352 | 0.88[YRI][hapmap] |
| rs2221383 | 0.87[YRI][hapmap] |
| rs59091994 | 0.87[AFR][1000 genomes] |
| rs6478976 | 0.91[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs7872043 | 0.96[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs912248 | 0.96[YRI][hapmap];0.86[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831666 | chr9:101874985-102018690 | Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
