Variant report

Variant	rs13440104
Chromosome Location	chr9:101955828-101955829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101952435..101959187-chr9:101982290..101985737,9	MCF-7	breast:
2	chr9:101954549..101958495-chr9:101980489..101982138,3	MCF-7	breast:
3	chr9:101954768..101956923-chr9:101982229..101985039,2	MCF-7	breast:
4	chr9:101948166..101949895-chr9:101954592..101957289,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119523	Chromatin interaction
ENSG00000106803	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10114715	1.00[CEU][hapmap];0.87[JPT][hapmap];0.88[YRI][hapmap];0.94[EUR][1000 genomes]
rs10121020	0.87[YRI][hapmap]
rs10819641	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.87[EUR][1000 genomes]
rs10988738	0.96[YRI][hapmap]
rs10988740	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10988742	0.95[YRI][hapmap]
rs10988743	0.82[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10988744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10988745	1.00[CEU][hapmap];0.92[YRI][hapmap];0.85[EUR][1000 genomes]
rs10988746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988749	1.00[CEU][hapmap]
rs12336513	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12336759	0.96[YRI][hapmap]
rs12336790	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs12340839	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12340952	0.92[YRI][hapmap];0.92[AFR][1000 genomes]
rs12345762	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes]
rs16905728	0.96[YRI][hapmap]
rs16918352	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.87[EUR][1000 genomes]
rs16918354	0.83[YRI][hapmap]
rs2221383	0.95[YRI][hapmap]
rs59091994	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6478976	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7872043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs912248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs912249	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101954600-101956000	Bivalent Enhancer	NHDF-Ad	bronchial
2	chr9:101954600-101956000	Enhancers	NHLF	lung
3	chr9:101955600-101956000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:101955800-101956600	Enhancers	Primary T cells from cord blood	blood

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