Variant report

Variant	rs7035537
Chromosome Location	chr9:101933675-101933676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101932897..101935803-chr9:101935996..101937502,2	MCF-7	breast:
2	chr9:101932270..101933911-chr9:101982534..101984839,2	K562	blood:
3	chr9:101659832..101662325-chr9:101933378..101936208,2	MCF-7	breast:
4	chr9:101932774..101936313-chr9:101937210..101940829,5	K562	blood:
5	chr9:101932557..101934266-chr9:101997104..101999753,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119523	Chromatin interaction
ENSG00000106803	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10121020	0.80[YRI][hapmap]
rs10819641	0.85[YRI][hapmap]
rs10988738	0.81[YRI][hapmap]
rs10988742	0.85[YRI][hapmap]
rs12336759	0.81[YRI][hapmap]
rs12345143	0.81[AMR][1000 genomes]
rs16905728	0.81[YRI][hapmap]
rs2221383	0.85[YRI][hapmap]
rs57839076	0.82[AMR][1000 genomes]
rs60965273	0.81[AMR][1000 genomes]
rs6478976	0.80[YRI][hapmap]
rs73653741	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101930400-101936600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:101930800-101936000	Weak transcription	GM12878-XiMat	blood
3	chr9:101931000-101933800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:101931400-101935400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:101931400-101937000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:101931600-101934200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:101931600-101934400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:101931600-101947000	Weak transcription	Right Atrium	heart
9	chr9:101932200-101933800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:101932200-101934400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:101932200-101935400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:101932200-101937000	Enhancers	Fetal Intestine Small	intestine
13	chr9:101932200-101940200	Enhancers	Fetal Intestine Large	intestine
14	chr9:101932400-101933800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr9:101932800-101933800	Weak transcription	Fetal Kidney	kidney
16	chr9:101932800-101935800	Weak transcription	Brain Hippocampus Middle	brain
17	chr9:101932800-101936600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr9:101933000-101934000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr9:101933000-101934000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr9:101933000-101935000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr9:101933000-101935200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr9:101933000-101935400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr9:101933000-101936800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:101933200-101934600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:101933200-101936200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr9:101933400-101933800	Flanking Bivalent TSS/Enh	HepG2	liver
27	chr9:101933600-101934400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr9:101933600-101935600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr9:101933600-101935800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr9:101933600-101936200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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