Variant report

Variant	rs57839076
Chromosome Location	chr9:101942959-101942960
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXM1	chr9:101942442-101942969	GM12878	blood:	n/a	n/a
2	WRNIP1	chr9:101942821-101943021	GM12878	blood:	n/a	n/a
3	BCLAF1	chr9:101942437-101942971	GM12878	blood:	n/a	n/a
4	NFIC	chr9:101942231-101943014	GM12878	blood:	n/a	n/a
5	RELA	chr9:101942470-101942967	GM12878	blood:	n/a	n/a
6	EBF1	chr9:101942571-101943131	GM12878	blood:	n/a	n/a
7	RUNX3	chr9:101942376-101943121	GM12878	blood:	n/a	n/a
8	NFIC	chr9:101942373-101943003	GM12878	blood:	n/a	n/a
9	RELA	chr9:101942511-101944711	GM18505	blood:	n/a	n/a
10	RUNX3	chr9:101942464-101942963	GM12878	blood:	n/a	n/a
11	SPI1	chr9:101942444-101943008	GM12891	blood:	n/a	n/a
12	CEBPB	chr9:101942391-101943048	GM12878	blood:	n/a	chr9:101942647-101942658
13	MTA3	chr9:101942389-101943181	GM12878	blood:	n/a	n/a
14	IKZF1	chr9:101942361-101943024	GM12878	blood:	n/a	chr9:101942752-101942760

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101937724..101939532-chr9:101941994..101944179,2	K562	blood:

Variant related genes	Relation type
ENSG00000227269	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10114715	0.80[AFR][1000 genomes]
rs10819641	0.84[AFR][1000 genomes]
rs12336513	0.84[AFR][1000 genomes]
rs12345143	0.81[AMR][1000 genomes]
rs12345762	0.85[AFR][1000 genomes]
rs60965273	0.81[AMR][1000 genomes]
rs7035537	0.82[AMR][1000 genomes]
rs73653741	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101931600-101947000	Weak transcription	Right Atrium	heart
2	chr9:101935200-101947200	Weak transcription	Gastric	stomach
3	chr9:101936400-101943800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:101936600-101949600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:101939200-101946400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:101939400-101943600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:101939400-101945400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:101940200-101943000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:101941000-101943400	Enhancers	Fetal Muscle Leg	muscle
10	chr9:101941400-101943000	Weak transcription	Fetal Lung	lung
11	chr9:101941800-101943600	Weak transcription	Primary B cells from cord blood	blood
12	chr9:101941800-101946800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:101942000-101943800	Enhancers	Fetal Intestine Large	intestine
14	chr9:101942200-101946800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr9:101942600-101943000	Enhancers	HepG2	liver
16	chr9:101942600-101944600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr9:101942800-101943400	Enhancers	Fetal Intestine Small	intestine
18	chr9:101942800-101943400	Enhancers	Fetal Muscle Trunk	muscle
19	chr9:101942800-101944000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:101942800-101944600	Flanking Active TSS	GM12878-XiMat	blood
21	chr9:101942800-101945000	Enhancers	Primary B cells from peripheral blood	blood
22	chr9:101942800-101945200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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