Variant report
| Variant | rs12003123 |
|---|---|
| Chromosome Location | chr9:101966168-101966169 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000119523 | Chromatin interaction |
| ENSG00000106803 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10988745 | 0.84[EUR][1000 genomes] |
| rs10988749 | 0.93[EUR][1000 genomes] |
| rs11545137 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12002203 | 0.87[ASN][1000 genomes] |
| rs12005715 | 0.87[ASN][1000 genomes] |
| rs12340839 | 0.84[EUR][1000 genomes] |
| rs16918376 | 0.87[ASN][1000 genomes] |
| rs17725470 | 0.87[ASN][1000 genomes] |
| rs17725597 | 0.87[ASN][1000 genomes] |
| rs17725608 | 0.87[ASN][1000 genomes] |
| rs17725644 | 0.87[ASN][1000 genomes] |
| rs17725679 | 0.87[ASN][1000 genomes] |
| rs17725720 | 0.87[ASN][1000 genomes] |
| rs17787503 | 0.87[ASN][1000 genomes] |
| rs17787533 | 0.87[ASN][1000 genomes] |
| rs17787606 | 0.87[ASN][1000 genomes] |
| rs28608552 | 0.87[ASN][1000 genomes] |
| rs35626507 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3780616 | 0.87[ASN][1000 genomes] |
| rs41274646 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41274648 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4265241 | 0.87[ASN][1000 genomes] |
| rs4554535 | 0.87[ASN][1000 genomes] |
| rs55676416 | 0.87[ASN][1000 genomes] |
| rs58644416 | 0.87[ASN][1000 genomes] |
| rs6478976 | 0.84[EUR][1000 genomes] |
| rs73653775 | 0.87[ASN][1000 genomes] |
| rs7857426 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7863354 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831666 | chr9:101874985-102018690 | Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:101964000-101982000 | Weak transcription | Brain Substantia Nigra | brain |
| 2 | chr9:101964200-101981800 | Weak transcription | Brain Hippocampus Middle | brain |
