Variant report

Variant	rs17787503
Chromosome Location	chr9:101990053-101990054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101987487..101991719-chr9:101992506..101995890,6	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10819642	0.84[EUR][1000 genomes]
rs11545137	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11788822	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12002203	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12003123	0.87[ASN][1000 genomes]
rs12005715	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16918376	1.00[ASN][1000 genomes]
rs17725470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725597	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725608	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725679	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17725720	1.00[ASN][1000 genomes]
rs17787533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787606	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28608552	1.00[ASN][1000 genomes]
rs35626507	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3780616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274646	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41274648	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4265241	1.00[ASN][1000 genomes]
rs4554535	1.00[ASN][1000 genomes]
rs55676416	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58644416	1.00[ASN][1000 genomes]
rs73653775	1.00[ASN][1000 genomes]
rs7857426	0.87[ASN][1000 genomes]
rs7863354	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101985400-101990200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:101985400-101992000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:101985400-101998200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:101985400-102004400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:101985600-101990200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:101985600-101990200	Weak transcription	Aorta	Aorta
7	chr9:101985600-101990200	Weak transcription	Colonic Mucosa	Colon
8	chr9:101985600-101990400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:101986000-101993400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:101986000-101995800	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:101986000-101996400	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:101986200-101990200	Weak transcription	Brain Angular Gyrus	brain
13	chr9:101986200-101994400	Strong transcription	A549	lung
14	chr9:101986200-101995600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:101986200-101995800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:101986200-101995800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:101986200-101996000	Strong transcription	Fetal Muscle Trunk	muscle
18	chr9:101986200-101997200	Strong transcription	Placenta	Placenta
19	chr9:101986200-102003000	Strong transcription	Fetal Muscle Leg	muscle
20	chr9:101986400-101993400	Strong transcription	Fetal Lung	lung
21	chr9:101986400-101993800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:101986400-101995800	Strong transcription	Primary hematopoietic stem cells	blood
23	chr9:101986400-101995800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr9:101986400-101996000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:101986600-101990200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr9:101986600-101990200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr9:101986600-101990200	Weak transcription	Hela-S3	cervix
28	chr9:101986600-101993000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr9:101986600-101993800	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr9:101986600-101995400	Strong transcription	NHEK	skin
31	chr9:101986600-101995800	Strong transcription	Fetal Intestine Large	intestine
32	chr9:101986600-101996000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr9:101986600-101996000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:101986800-101990200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr9:101986800-101990400	Weak transcription	Colon Smooth Muscle	Colon
36	chr9:101986800-101994200	Strong transcription	Fetal Thymus	thymus
37	chr9:101986800-101995000	Strong transcription	NHDF-Ad	bronchial
38	chr9:101986800-101995800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr9:101986800-101995800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr9:101986800-101995800	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr9:101986800-101995800	Strong transcription	HSMM	muscle
42	chr9:101986800-101996000	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr9:101986800-101996600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr9:101986800-101996800	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr9:101986800-101997400	Strong transcription	Primary T cells from cord blood	blood
46	chr9:101986800-101998400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr9:101987000-101990200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr9:101987000-101995800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr9:101987000-101996200	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr9:101987200-101991000	Strong transcription	Brain Germinal Matrix	brain

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